Projects

This page gives links to various projects that CCP4 is involved in, indicating the breadth of CCP4 activities.

Core Projects

Projects that CCP4 directly support or promote, generally leading to enhancements to the CCP4 software suite.

CCP4i2 CCP4i2 Graphical User Interface    http://www.ccp4.ac.uk/ccp4i2/ccp4i2-home.htm

CCP4MG CCP4 Molecular Graphics Project    http://www.ccp4.ac.uk/MG/

DIALS Diffraction Integration for Advanced Light Sources http://dials.github.io/

Gemmi General MacroMolecular I/O   project-gemmi.github.io

PISA Protein Interfaces, Surfaces and Assemblies    http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html

CCP4 Cloud Distributed computing for macromolecular crystallography
http://ccp4serv6.rc-harwell.ac.uk/jscofe/

Grants and Collaborations, Ongoing

CCP4 and associates are participants in a range of grants, consortia and infrastructure developments, which position CCP4 in the wider context of structural biology and computational science.

CoSeC Partnership of STFC-supported software projects https://www.scd.stfc.ac.uk/Pages/CoSeC.aspx

Cyttron II Development of bioimaging technologies http://www.cyttron.org/

Dimple Pipeline for refinement and ligand screening http://ccp4.github.io/dimple/

Instruct Integrated access to structural biology technology and methodologies http://www.structuralbiology.eu/

PDBe Protein Databank in Europe http://pdbe.org.

Related and Contributed Projects

The following projects either provide software to the CCP4 suite, or provide independent software which is complementary to CCP4.

AMPLE Ab initio modelling for Molecular Replacement https://ample.readthedocs.io/

ARCIMBOLDO Ab initio macromolecular phasing http://chango.ibmb.csic.es/

CCPBioSim Collaborative Computational Project for Biomolecular Simulation  http://www.ccpbiosim.ac.uk

CCP-EM Collaborative Computational Project for Electron cryo-Microscopy http://www.ccpem.ac.uk/

CCPN Collaborative Computational Project for macromolecular NMR http://www.ccpn.ac.uk/

CHOOCH Gwyndaf Evans’ program for analysing fluorescence spectra http://gwyndafevans.co.uk/software/chooch/

Clipper Kevin Cowtan’s crystallographic libraries and applications http://www.ysbl.york.ac.uk/~cowtan/

ConKit Python library to work and manipulate residue-residue contact prediction data http://www.conkit.org/

Coot Paul Emsley’s Graphical Model Building Program https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/

Mosflm Integration software for single crystal diffraction data from area detectors http://www.mrc-lmb.cam.ac.uk/harry/mosflm/

MrBUMP Automated Molecular Replacement.   http://www.ccp4.ac.uk/MrBUMP/

PDBExtract RCSB software for preparing data for submission to the PDB http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html

Phaser Randy Read group’s program for phasing macromolecular crystal structures using Maximum Likelihood method https://www.phaser.cimr.cam.ac.uk/index.php/Randy_J._Read

Refmac Garib Murshudov’s Maximum Likelihood Macromolecular Refinement Program https://bernhardcl.github.io/coot/

SHELX C/D/E George Sheldrick’s programs for experimental phasing of macromolecules by the SAD, MAD, SIR, SIRAS and RIP methods http://shelx.uni-goettingen.de/

SIMBAD Sequence-independent Molecular Replacement https://simbad.readthedocs.io/

UglyMol Web-based molecular viewer mimicking Coot https://uglymol.github.io/

WinCoot Bernhard Lohkamp’s page for the Windows version of Coot https://bernhardcl.github.io/coot/

XIA2 Graeme Winter’s tools for automating macromolecular crystallographic data reduction https://xia2.github.io

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