Table of Contents
Update packages
The tarballs linked to this page are for use with CCP4 updater (ccp4um) in off-line mode (e.g. without network connection). You do not need them if your CCP4 update works normally through the internet.
Follow instructions below if you do intend to use the CCP4 updater in off-line mode.
Linux, Mac OS X
1. Download and uncompress the appropriate update directory:
2. Start Update Manager from the command line as follows:
ccp4um -uri full-path-to-update-directoryWindows
1. Download and uncompress the appropriate update directory:
2. Double-click on CCP4-Console icon on the Desktop
3. Start Update Manager from CCP4-Console as in Example below.
Example
The full path to downloaded and unzipped update directory:
C:\Users\Andrey\Downloads\ccp4-7.0-updates-win64The command to run in CCP4-Console (note that URI contains slashes, not backslashes):
ccp4um -uri file:///C:/Users/Andrey/Downloads/ccp4-7.0-updates-win64An issue with double occurrence of ccp4-7.0-updates-win64 in the folder path.
There are several ways of performing step (1). One of them is to download the zip-archive, right mouse click on the archive icon and select Extract All… from the menu. The Extract window opens with the default destination path ending with ccp4-7.0-updates-win64. With such a default, the path to update folder will have two occurrences of ccp4-7.0-updates-win64 in it, for example:
C:\Users\Andrey\Downloads\ccp4-7.0-updates-win64\ccp4-7.0-updates-win64Correct URI in (3) accordingly in such a case or move the internal folder to a more convenient location.
Known issues with Update Manager
| No | 6 |
| Fixed | 7.0.070 |
| Introduced | 7.0.069 |
| Symptoms | CCP4i2 does not start |
| Affected interfaces | CCP4i2 |
| Affected platforms | Some versions of Mac OS X and Linux |
| Additional conditions | – |
| What to do | 1. Open Terminal window 2A. If ccp4-7.0 was installed “for all users”, type in
2B. Otherwise, type in
3. This command starts Update Manager. Use it to apply update 70 or newer. * Update Manager not starting at step (2A/B) means CCP4 environment variables are not set in the Terminal shell. In this case, specify full path to ccp4um:
or
for cases (2A) and (2B), respectively. ** Alternatively, start Update Manager from CCP4i. |
| No | 5 |
| Fixed | – |
| Introduced | 7.0.053 (16.03.18) |
| Symptoms | Interface shows message Checking for new updates and does not activate the Manage Updates button |
| Affected interfaces | CCP4i |
| Affected platforms | Mac OS X (and others?) |
| Additional conditions | – |
| What to do | Start Update Manager from CCP4i2 or from the command line (as in No 4) |
| No | 4 |
| Fixed | 7.0.053 (19.03.18) |
| Introduced | 7.0.053 (16.03.18) |
| Symptoms | Update Manager window does not open |
| Affected interfaces | CCP4i2, CCP4i |
| Affected platforms | Linux, Mac OS X |
| Additional conditions | CCP4 is installed “for all users” (Update Manager asks for admin password) Update 53 installed before Sunday 18th of March 22:30 GMT |
| What to do | 1. Open Terminal window 2. Type in
3. In the Update Manager window: “Next”; uncheck the check box next to 7.0.053; “Apply” 4. Repeat (2) and apply new updates (including the repaired version of update 53) * Update Manager not starting at step (2) means CCP4 environment variables are not set in the Terminal shell. In this case, specify full path to ccp4um:
|
| No | 3 |
| Fixed | 7.0.053 (16.03.18) |
| Introduced | 7.0.052 (28.02.18) |
| Symptoms | Update Manager window does not open |
| Affected interfaces | CCP4i2 |
| Affected platforms | Windows |
| Additional conditions | – |
| What to do | 1. Double-click on CCP4-Console icon on the Desktop 2. Type in
3. Apply new updates |
| No | 2.2 |
| Fixed | – |
| Introduced | Windows feature |
| Symptoms | Error dialog: Update encountered the following error: Cannot open file: … and cannot continue normally |
| Affected interfaces | CCP4i2, CCP4i, command line |
| Affected platforms | Windows |
| Additional conditions | There are running CCP4 jobs |
| What to do | 1. Wait for all jobs to finish 2. Start Update Manager 3. In the Update Manager window: “Next”; uncheck the check box next to the last applied update; “Apply”; “Finish” 4. Start Update Manager again and apply new updates * In some cases files remain locked even when job has finished and you may need to restart your computer. See also No 2.1 below |
| No | 2.1 |
| Fixed | 7.0.053 (16.03.18) |
| Introduced | 7.0.000 (07.01.16) |
| Symptoms | Error dialog: Update encountered the following error: Cannot open file: … and cannot continue normally |
| Affected interfaces | CCP4i2 |
| Affected platforms | Windows |
| Additional conditions | No CCP4 programs are currently running |
| What to do | 1. Quit CCP4i2 2. Start Update Manager from CCP4i or from CCP4-Console (as in No 3) 3. In the Update Manager window: “Next”; uncheck the check box next to the last applied update; “Apply”; “Finish” 4. Start Update Manager again and apply new updates See also No 2.2 above |
| No | 1.2 |
| Fixed | 7.0.053 (16.03.18) |
| Introduced | 7.0.049 (15.01.18) |
| Symptoms | Postinstall scripts fail with the following error messageQObject::connect: Cannot connect MonitoredProcess::lines(const QString) to (null)::append(const QString) |
| Affected interfaces | command line |
| Affected platforms | Linux, Mac OS X, Windows |
| Additional conditions | – |
| What to do | Apply new updates |
| No | 1.1 |
| Fixed | 7.0.049 (15.01.18) |
| Introduced | 7.0.000 (07.01.16) |
| Symptoms | Postinstall scripts occasionally fail with timeout message |
| Affected interfaces | CCP4i2, CCP4i |
| Affected platforms | Linux, Mac OS X, Windows |
| Additional conditions | – |
| What to do | Restart Update Manager and continue applying new updates. The best option for Windows is to apply new updates from CCP4-Console (as in No 3 above) or to reinstall CCP4 |
Update summaries
Update 7.0.001
Date: 25.01.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| acedrg | updated tables and executable | yes | yes | yes | - | - |
| balbes-pipeline | added | - | yes | yes | - | - |
| ccp4i | changes associated with changes in ccp4um and crank2 | yes | yes | yes | - | - |
| ccp4i2 | fixes for importing projects | yes | yes | yes | - | - |
| refmac task: bond order added to ligands report | yes | yes | yes | - | - | |
| fix stopping unnecessary reading of MTZ file | yes | yes | yes | - | - | |
| fix type P2 21 21 | yes | yes | yes | - | - | |
| temporary fix to aimless_pipe FreeR test | yes | yes | yes | - | - | |
| fix stopping possible crash on exit; | yes | yes | yes | - | - | |
| fix for coping with data in external files | yes | yes | yes | - | - | |
| added 'Quick Expert' and Youtube links to Help menu | yes | yes | yes | - | - | |
| Please pick up update 4588 from ccp4i2 trunk. | yes | yes | yes | - | - | |
| buccaneer pipeline: BFAC restraints reverted to refmac defaults | yes | yes | yes | - | - | |
| fixed sporadic failures to reopen New project window | yes | yes | yes | - | - | |
| changes associated with changes in ccp4um | yes | yes | yes | - | - | |
| ccp4mg | fix for using Gesamt in superpose task | yes | yes | yes | - | - |
| crank2 | added scaleit; other fixes | yes | yes | yes | - | - |
| dials | fixed dials.reciprocal_lattice_viewer | yes | yes | yes | - | - |
| monomers | added 1774 entries generated with acedrg | yes | yes | yes | - | - |
| curated several entries | yes | yes | yes | - | - | |
| mrbump | updated database for PDB sequences | yes | yes | yes | - | - |
| qt4 | Added missing QtDBus library required for some platforms | - | yes | yes | - | - |
Update 7.0.002
Date: 02.02.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| Molrep | Bug: fixed integration radius dependence on unit cell | yes | yes | yes | - | - |
| prosmart | Bug: bug fixes | yes | yes | yes | - | - |
| ample | Bug: Bug fixes | yes | yes | yes | - | - |
| acedrg | Bug: Bug fixes | yes | yes | yes | - | - |
| clipper | Bug: remove unnecessary file reads | yes | yes | yes | - | - |
| updater | Bug: Bug fixes | yes | yes | yes | - | - |
| ccp4i2 | Bug: validate geometry - fix for issue with multiple conformations | yes | yes | yes | - | - |
| Bug: ccp4mg launch - fix for issue on windows | yes | yes | yes | - | - | |
| Bug: crank2 output fixes | yes | yes | yes | - | - |
Update 7.0.003
Date: 11.02.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | fixed update dialog window launching every time a new project window opens | yes | yes | yes | - | - |
| setup | fixed update manager for windows 64-bit accessing incorrect directory on server | yes | yes | yes | yes | yes |
Update 7.0.004
Date: 26.02.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| documentation | update: update to privateer documentation | yes | yes | yes | yes | yes |
| ccp4i2 | privateer interface - fixed a bug with three letter codes not being passed to Privateer | yes | yes | yes | yes | yes |
| bug - fix for overly aggressive update messages | yes | yes | yes | - | - | |
| viewhkl | update 0.0.2 - reflectionlist updates and set intensity for unmerged files | yes | yes | yes | yes | yes |
| ccp4i | update: phaser interfaces update | yes | yes | yes | yes | yes |
| phaser | bug fixes | yes | yes | yes | yes | yes |
| coot | fix mixed libpng status | yes | - | - | - | - |
| aimless | new version 0.5.23 | yes | yes | yes | yes | yes |
| ccp4mg | fixes problems with NMR models in MrBUMP interface | yes | yes | yes | yes | yes |
| fixes batch rendering when CCP4 is on different drive from output file | - | - | - | yes | yes | |
| pointless | XML fixes | yes | yes | yes | yes | yes |
| monomers | added and corrected several monomers | yes | yes | yes | yes | yes |
| removed duplicated monomer COM to fix JLigand | yes | yes | yes | yes | yes | |
| mrbump | updated for running in CCP4i2 on Windows | yes | yes | yes | yes | yes |
Update 7.0.005
Date: 08.03.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i | fixed communication with WinCoot | - | - | - | yes | yes |
Update 7.0.006
Date: 18.03.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ctruncate | update to 1.17.9 | yes | yes | yes | yes | yes |
| blend | update to 0.6.19 | yes | yes | yes | yes | yes |
| clipper-python | conflict between matrixRow class from ccp4mg and clipper-python | yes | yes | yes | yes | yes |
| documentation | freerflag documentation update | yes | yes | yes | yes | yes |
| pisa | update | yes | yes | yes | yes | yes |
| xia2 | include missing xia2_pychef_ext.so | yes | yes | yes | yes | yes |
| xia2 bug fix | yes | yes | yes | yes | yes | |
| crank2 | bug fixes | yes | yes | yes | yes | yes |
| ccp4i2 | display database icon on dictionary selection widget in Coot task | yes | yes | yes | yes | yes |
| Fix locale issues in linux startup scripts | yes | yes | yes | yes | yes | |
| Better display of the Input tab for seelcted sub-jobs | yes | yes | yes | yes | yes | |
| Remove View/Edit from Dictionary file menu | yes | yes | yes | yes | yes | |
| Fix 'View in CCP4mg' for Refmac tasks | yes | yes | yes | yes | yes | |
| ccp4i2 imosflm interface: pass job directory to imosflm so output goes in correct location | yes | yes | yes | yes | yes | |
| Fixes failure to run on some SUSE linux and forces "C" locale to avoid internationalization problems | yes | yes | yes | yes | yes | |
| mmdb2 | MMDB update | yes | yes | yes | yes | yes |
| viewhkl | update | yes | yes | yes | yes | yes |
| qtlibs | update | yes | yes | yes | yes | yes |
| chooch | previously missing | - | - | - | yes | yes |
Update 7.0.007
Date: 24.03.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | update to release 1.1 | yes | yes | yes | yes | yes |
| cctbx | update to 17 March 2016 version | yes | yes | yes | - | - |
Update 7.0.008
Date: 05.04.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| monomers | Chirality fix in 5UJ, PMR; format fix B1Z; added 47K, 5TW, 5UO | yes | yes | yes | yes | yes |
| clipper-python | }Fixes matrix element access | yes | yes | yes | - | - |
| Xia2 | Update to release 0.3.6.3 (fixes ctruncate issue) | - | - | - | yes | yes |
| pointless | update to 1.10.21 | yes | yes | yes | yes | yes |
| trap non-overlap between data and reference | yes | yes | yes | yes | yes | |
| improved resolution limit robustness | yes | yes | yes | yes | yes | |
| aimless | update to 0.5.24 | yes | yes | yes | yes | yes |
| fix bug if different resolutions for different runs. Small bug fix in secondary beam scaling. Switch off secondary scaling in first pass, stabilises the scaling in some cases. Trap negative scales (shouldn't happen). Fixes to sample SDs (for high multiplicity), compare sample SD to propagated SD. Output secondary beam corrections to logfile and XML. Reset SdFac after first round scaling | yes | yes | yes | yes | yes | |
| pisa | Generation of complete remarks 300 and 350 | yes | yes | yes | yes | yes |
| ccp4i2 | Make modern style the default | yes | yes | yes | yes | yes |
| Fix for FreeR flag generation when one already exists | yes | yes | yes | yes | yes | |
| Fix import merged performing aimless analysis on intensities when user has selected Fs | yes | yes | yes | yes | yes | |
| ccp4i | locate clustalw2 for alignment task | yes | yes | yes | yes | yes |
Update 7.0.009
Date: 06.04.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| coot | update to version 0.8.3 | yes | yes | yes | - | - |
Update 7.0.010
Date: 11.04.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| blend | update to 0.6.20 | yes | yes | yes | yes | yes |
| Fixed annoying halting of the program in endless loop when asking for dendrogram-type graphics (graphics mode). Now the deepest possible level is always selected even when the user chooses an higher level. Output in "graphics" directory has also level index limited to deepest level, no matter what user decides. | yes | yes | yes | yes | yes | |
| Increased formatting space for I and sigI in "refs_*_*.dat" files. | yes | yes | yes | yes | yes | |
| acedrg | updated internal tables for bonds and angles | yes | yes | yes | yes | yes |
| the version working under Windows system | yes | yes | yes | yes | yes | |
| Xia2 | (experimental) turn off multiprocessing | - | - | - | yes | yes |
| aimless | 0.5.25 undoes nasty introduced in 0.5.24 | yes | yes | yes | yes | yes |
| documentation | update pointless, aimless and dimple documentation | yes | yes | yes | yes | yes |
| coot | correct for renaming of findwaters and findligand binaries, and relocation of mini-rsr | yes | yes | yes | - | - |
Update 7.0.011
Date: 27.04.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | major update | yes | yes | yes | yes | yes |
| dials | update to 1.1.3 | yes | yes | yes | yes | yes |
| libccp4 | add P 1 21/n 1 to symop.lib | yes | yes | yes | yes | yes |
| arcimboldo | extended options in ccp4i interface | yes | yes | yes | - | - |
| connection to remote grid | yes | yes | yes | - | - | |
| molrep | minor update aimed at EM | yes | yes | yes | yes | yes |
| sfcheck | fix for reading of EM maps | yes | yes | yes | yes | yes |
Update 7.0.012
Date: 06.05.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| refmac | Fc(anom) is now calculated if ANOM MAPO is used | yes | yes | yes | yes | yes |
| pointless | update to 1.10.25 | yes | yes | yes | yes | yes |
| More robust alternative indexing checks to previous file | yes | yes | yes | yes | yes | |
| Allow combination of multiple merged files into an unmerged file | yes | yes | yes | yes | yes | |
| Added extra optional headers to free-format input files | yes | yes | yes | yes | yes | |
| jsrview | improved efficiency for jobs with many calls to rvapi | yes | yes | yes | yes | yes |
| ctruncate | 1.17.14: update anomalous warnings | yes | yes | yes | yes | yes |
| libg | bug fixes | yes | yes | yes | yes | yes |
| ccp4i2 | updated import_merged | yes | yes | yes | yes | yes |
| libccp4 | something for Harry | yes | yes | yes | yes | yes |
Update 7.0.013
Date: 17.05.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | DIALS 1.2.0 | yes | yes | yes | yes | yes |
| Support for EIGER data | yes | yes | yes | yes | yes | |
| Outlier rejection for centroid refinement now in blocks | yes | yes | yes | yes | yes | |
| dials.discover_better_experimental_model now uses random subset of reflections from entire scan | yes | yes | yes | yes | yes | |
| xia2 | xia2 0.4.0.335 | yes | yes | yes | yes | yes |
| Support for EIGER data in -dials and -3d pipelines (latter requires H5ToXDS) | yes | yes | yes | yes | yes | |
| xia2.html report automatically generated after successful completion of xia2 | yes | yes | yes | yes | yes | |
| DIALS pipeline now includes DIALS beam centre search | yes | yes | yes | yes | yes | |
| xia2.to_shelx can use output of xia2.get_unit_cell_errors and generate cif file | yes | yes | yes | yes | yes |
Update 7.0.014
Date: 24.05.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ARP/wARP | Update for operation with new refmac | yes | yes | yes | - | - |
| refmac | scaling and many other bugs were removed to to make sure that arp/warp works without problem | yes | yes | yes | yes | yes |
| Multiple sharpeinging/blurring options have been added. These are for EM maps as well as crystallographic maps | yes | yes | yes | yes | yes | |
| Many features have been added | yes | yes | yes | yes | yes | |
| ccp4i2 | fixes for coot interface | yes | yes | yes | yes | yes |
| aimless | 0.5.26, speed up of SF calculation | yes | yes | yes | yes | yes |
| coot | reading of anomalous maps | yes | yes | yes | yes | yes |
| monomers | Chirality fix in RG1; multiple fixes for ASX, GLX; format fix in 0KA; replaced 51P; added 46W, 4B7, K3G, VVA, XP5 | yes | yes | yes | yes | yes |
| gesamt | 1.13: detail CSV reports, inclusion/exclusion lists and trim options for pdb scans | yes | yes | yes | yes | yes |
| documentation | update for aimless and pointless | yes | yes | yes | yes | yes |
| ccif | update of mmcif dictionary to 4.064 (3/5/16) | yes | yes | yes | yes | yes |
Update 7.0.015
Date: 17.06.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4mg | Updated MrBUMP interface | yes | yes | yes | yes | yes |
| N-/O-glycosylation selection menus | yes | yes | yes | yes | yes | |
| New glycan viewer | yes | yes | yes | yes | yes | |
| privateer | N- and O- glycan structure validation | yes | yes | yes | yes | yes |
| reworked stereochemistry detection | yes | yes | yes | yes | yes | |
| generates SVG diagrams of glycans | yes | yes | yes | yes | yes | |
| many bug fixes | yes | yes | yes | yes | yes | |
| ccp4i2 | new privateer interface | yes | yes | yes | yes | yes |
| mrbump | updates to include better scoring and ensembling | yes | yes | yes | yes | yes |
| ample | New modularised version of AMPLE | yes | yes | yes | yes | yes |
| pointless | 1.10.27: accurate averaging of wavelength | yes | yes | yes | yes | yes |
| aimless | 0.5.27: accurate averaging of wavelength | yes | yes | yes | yes | yes |
| ccp4i | update ample interface | yes | yes | yes | yes | yes |
| gesamt | update to domain identification | yes | yes | yes | yes | yes |
Update 7.0.016
Date: 24.06.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| refmac5 | bug fixes | yes | yes | yes | yes | yes |
| monomers | more monomers and corrections | yes | yes | yes | yes | yes |
| ccp4i2 | update buccaneer pipeline and add shelxeMR | yes | yes | yes | yes | yes |
| buccaneer | update to 1.6.3 | yes | yes | yes | yes | yes |
| molrep | aniso correction improvement | yes | yes | yes | yes | yes |
| sfcheck | aniso correction improvement | yes | yes | yes | yes | yes |
| blend | update to 0.6.21 | yes | yes | yes | yes | yes |
| ViewHKL | deal with names including slashes | yes | yes | yes | yes | yes |
| dimple | adjust parsing of pointless output for changes in pointless 1.10.22 | yes | yes | yes | yes | yes |
| documentation | update blend documentation | yes | yes | yes | yes | yes |
| ARP/wARP | Update for operation with new refmac | yes | yes | yes | - | - |
Update 7.0.017
Date: 07.07.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| arcimboldo | fix for space group C121 | yes | yes | yes | - | - |
| ccp4-progs | freerflag: fix forunit cell parameters inconsistent with the space group | yes | yes | yes | yes | yes |
| lorestr | added Windows support | - | - | - | yes | yes |
| introduced parallelisation and corresponding changes made in ccp4i | yes | yes | yes | yes | yes | |
| jsrview | fixed widget removal | yes | yes | yes | yes | yes |
| fixed dynamic display of several files in separate tabs | yes | yes | yes | yes | yes | |
| option of putting report page as div | yes | yes | yes | yes | yes | |
| dials | fixed export_bitmaps | yes | yes | yes | yes | yes |
Update 7.0.018
Date: 12.08.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | improved menu and task responsiveness | yes | yes | yes | yes | yes |
| fixes to SIRAS pipeline | yes | yes | yes | yes | yes | |
| remote job submission | yes | yes | yes | yes | yes | |
| shelxe | 1. MRSAD (when shelxe reads name.pda and name_fa.hkl) was not working correctly. This was reported by Thomas Schneider. | yes | yes | yes | yes | yes |
| 2. There was an error in calculating the phase errors relative to a reference structure that was specific to the not very common space group F23, reported by Jens Thomas. | yes | yes | yes | yes | yes | |
| coot | coot 0.8.5 | yes | yes | yes | - | - |
Update 7.0.019
Date: 06.09.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | update to 1.3 | yes | yes | yes | yes | yes |
| xia2 | update to 0.5 | yes | yes | yes | yes | yes |
| ccp4i2 | update for xia2 changes | yes | yes | yes | yes | yes |
| coot | libpng issue correction | yes | - | - | - | - |
Update 7.0.020
Date: 22.09.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| pisa | update to version 2.0.9 | yes | yes | yes | yes | yes |
| crystal data is now written in output structure files | yes | yes | yes | yes | yes | |
| ccp4i2 | optional use of native file browser and separate Download button | yes | yes | yes | yes | yes |
| arcimboldo | fixed check for shelx version | yes | yes | yes | - | - |
| pointless | update to 0.5.28 | yes | yes | yes | yes | yes |
| prosmart | update to 0.853 | yes | yes | yes | yes | yes |
| Added additional support for nucleic acids | yes | yes | yes | yes | yes | |
| coot | update to 0.8.6 | yes | yes | yes | - | - |
| correction to pyrogen python call | yes | yes | yes | - | - | |
| ARP/wARP | installation script is rerun in conjunction with CCP4 update 16 | yes | yes | yes | - | - |
Update 7.0.021
Date: 14.10.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| pandda | New application: a multi-dataset electron density analysis approach to changed-state (e.g. bound ligand) identification | yes | yes | yes | - | - |
| aimless | 0.5.28 format change to RunPairs to avoid coalescence of columns | yes | yes | yes | yes | yes |
| ccp4i2 | Improvements to remote running and enable customised remote running | yes | yes | yes | yes | yes |
| Add 'Show jobs and processes' option to the Utilities menu | yes | yes | yes | yes | yes | |
| Add option to copy job parameters into a task. | yes | yes | yes | yes | yes | |
| More automatic cleanup of temporary files on closing down CCP4i2 | yes | yes | yes | yes | yes | |
| Fix 'Project manager' issue that allowed a project to be its own parent (and disappear) | yes | yes | yes | yes | yes | |
| ccp4i | superpose-gesamt: corrected previously mixed fixed and moving molecules | yes | yes | yes | yes | yes |
| clipper-python | fixes for ccp4i2 | yes | yes | yes | yes | yes |
| documentation | documentation for pandda | yes | yes | yes | - | yes |
| update of blend documentation | yes | yes | yes | yes | yes | |
| python | Inclusion of standalone python for i2 to fix issues with links and crashes | - | - | - | yes | - |
Update 7.0.022
Date: 18.11.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| shelxl | update | yes | yes | yes | yes | yes |
| phaser | update to 2.7.17 | yes | yes | yes | yes | yes |
| xia2 | update to 0.5.57 | yes | yes | yes | yes | yes |
| dials | update to 1.3.5 | yes | yes | yes | yes | yes |
| cctbx | update | yes | yes | yes | yes | yes |
| arcimboldo | Update for new phaser | yes | yes | yes | yes | yes |
| updated ccp4i task interface for lite and added interfaces for borges and schredder | yes | yes | yes | yes | yes | |
| fixes for borges library | yes | yes | yes | yes | yes | |
| ccp4i | Updated phaser interfaces | yes | yes | yes | yes | yes |
| bug fix: update manager on windows 10 | yes | yes | yes | yes | yes | |
| ccp4i2 | update for new phaser | yes | yes | yes | yes | yes |
| bug fix: added opt out for updates | yes | yes | yes | yes | yes | |
| aimless | update to 0.5.29 | yes | yes | yes | yes | yes |
| pointless | update to 1.10.27 | yes | yes | yes | yes | yes |
Update 7.0.023
Date: 23.11.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| coot | update to coot 0.8.7 | yes | yes | yes | - | - |
| phaser | Bug fixes: ccp4i and interaction with Arcimboldo | yes | yes | yes | yes | yes |
| Update: Improved treatment of systematically weak data (e.g. severe anisotropy) | yes | yes | yes | yes | yes | |
| ccp4i | bug fix: phaser, updated defaults for phaser tasks | yes | yes | yes | yes | yes |
| bug fix: mrbump, updated defaults for phaser | yes | yes | yes | yes | yes | |
| numpy | numpy update for ccp4i2 python | - | - | - | yes | - |
Update 7.0.024
Date: 26.11.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| coot | fix: fix to coot auto-mutate | yes | yes | yes | - | - |
| pointless | 1.10.28 trap Nan in centrosymmetric probability (small molecule non-chiral) | yes | yes | yes | yes | yes |
| crank2 | update: 2.0.132 | yes | yes | yes | yes | yes |
| refmac | Refmac would confuse atoms names when a link between the same monomer names was defined. | yes | yes | yes | yes | yes |
| monomers | various updates | yes | yes | yes | yes | yes |
| blend | update: blend version 0.6.22 | yes | yes | yes | yes | yes |
| ccp4i2 | update:updated crank2 pipeline 2.0.132 | yes | yes | yes | yes | yes |
| update:gesamt single chain alignment | yes | yes | yes | yes | yes | |
| ccp4i | update: updated crank2 interface 2.0.132 | yes | yes | yes | yes | yes |
Update 7.0.025
Date: 07.12.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| MrBUMP | Gesamt-aligned ensembling added | yes | yes | yes | yes | yes |
| Bug fixes | yes | yes | yes | yes | yes | |
| dials | Fixed configuration to repair xia2 and dials.image_viewer | yes | yes | yes | - | - |
| sfcheck | Fixed postscript output | yes | yes | yes | yes | yes |
| CCP4mg | Update for MrBUMP model preparation support | yes | yes | yes | yes | yes |
| ccp4i | Updates to MrBUMP interface | yes | yes | yes | yes | yes |
Update 7.0.026
Date: 15.12.16
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| coot | Fix for auto-mutation errors (again) | yes | yes | yes | - | - |
| Turn off ccp4srs, fixes crash in coot-mini-rsr | yes | yes | yes | - | - |
Update 7.0.027
Date: 06.01.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| shelxe | update expiry date | yes | yes | yes | yes | yes |
| prosmart | update to 0.855 | yes | yes | yes | yes | yes |
| added ability to generate restraints involving alternative conformations | yes | yes | yes | yes | yes | |
| aimless | update to 0.5.31 | yes | yes | yes | yes | yes |
| restrict Emax test to resolutions with a valid normalisation | yes | yes | yes | yes | yes | |
| monomers | additions and corrections | yes | yes | yes | yes | yes |
| lorestr | Bug fixes | yes | yes | yes | yes | yes |
| ctruncate | update to 1.17.20 | yes | yes | yes | yes | yes |
| corrections to text on ice-rings | yes | yes | yes | yes | yes | |
| improve stability when dataset name is incorrect | yes | yes | yes | yes | yes | |
| cif2mtz | Bug fixes | yes | yes | yes | yes | yes |
| spicker | New version | yes | yes | yes | yes | yes |
| privateer | fixes dirty CIF bug | yes | yes | yes | yes | yes |
| introduces oxford angles into the SVG glycan diagram | yes | yes | yes | yes | yes | |
| introduced support for xylobiose | yes | yes | yes | yes | yes | |
| ccp4i2 | interface tidy and update | yes | yes | yes | yes | yes |
| arcimboldo | updates and bug fixes | yes | yes | yes | - | - |
Update 7.0.028
Date: 26.01.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| DIALS | update to 1.4.2 | yes | yes | yes | yes | yes |
| XIA2 | update for DIALS 1.4.2 | yes | yes | yes | yes | yes |
| ccp4i | update to xia2 interface | yes | yes | yes | yes | yes |
| ccp4i2 | update to xia2 interface | yes | yes | yes | yes | yes |
| Fix bug preventing display of Merge MTZs task | yes | yes | yes | yes | yes | |
| ccp4-progs | gensym: fix SPHERE option | yes | yes | yes | yes | yes |
Update 7.0.029
Date: 10.02.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| pointless | update to 1.10.29 | yes | yes | yes | yes | yes |
| Do not use alternative reindex operators which will fail cell tolerance test later. Make the just-reindex C2-}I2 conversion more robust. | yes | yes | yes | yes | yes | |
| pisa | Fixed an essential bug in the calculation of disulphide bond | yes | yes | yes | yes | yes |
| dimple | check the mtz unit cell against a list of known contaminants | yes | yes | yes | yes | yes |
| bug fixes | yes | yes | yes | yes | yes | |
| acedrg | Many updates including internal tables and algorithms | yes | yes | yes | yes | yes |
| ccp4mg | Fix bug in Mg/MrBUMP whereby no atoms are shown. This is to cope with changes in multi-domain MrBUMP. | yes | yes | yes | yes | yes |
Update 7.0.030
Date: 16.02.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| DIALS | DIALS 1.4.4 (2017-02-09): | yes | yes | yes | yes | yes |
| dials.export format=json | yes | yes | yes | yes | yes | |
| fix labels and ranges in dials.report plots | yes | yes | yes | yes | yes | |
| xia2 | xia2 0.5.179: | yes | yes | yes | yes | yes |
| fix incorrect anomalous completeness statistics | yes | yes | yes | yes | yes | |
| bug fix for pipeline=dials scaler=xdsa combination | yes | yes | yes | yes | yes | |
| putative bug fix for resetting refiners when combined with multi-sweep indexing | yes | yes | yes | yes | yes | |
| fix for integrate_p1=True reintegrate_correct_lattice=False when lattices are eliminated | yes | yes | yes | yes | yes |
Update 7.0.031
Date: 22.02.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | Fixing phaser_MR_AUTO compatability with new phaser, which otherwise raised pickling issues | yes | yes | yes | yes | yes |
| DR pipeline, add Wilson plot to top level graphs | yes | yes | yes | yes | yes | |
| acedrg | Fixed bugs on the cif parser to deal with special characters etc. | yes | yes | yes | yes | yes |
| arcimboldo | Corrections on BORGES and new features in SHREDDER | yes | yes | yes | - | - |
Update 7.0.032
Date: 06.03.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ample | Use of contact prediction | yes | yes | yes | yes | yes |
| ccp4i | Updates to ample interface | yes | yes | yes | yes | yes |
| conkit | New component for contact prediction | yes | yes | yes | yes | yes |
| acedrg | add a parameter at call RDKit "addHs" function | yes | yes | yes | yes | yes |
| New feature: Comparison of RDKit UFF forcefield and REFMAC Energy | yes | yes | yes | yes | yes | |
| Bug fix: Cic parser : a new line break added. | yes | yes | yes | yes | yes | |
| New feature: Using RDKit UFF energy to select initial conformers of top scores to do geometric optimization by REFMAC | yes | yes | yes | yes | yes | |
| New features: Allow users to request (1) number of initial conformers for acedrg to try. option -j (2) number of RDKit optimization steps option -l | yes | yes | yes | yes | yes | |
| ctruncate | update to 1.17.22 | yes | yes | yes | yes | yes |
| moderate bad rings report | yes | yes | yes | yes | yes | |
| protect Rstandard against negative values | yes | yes | yes | yes | yes | |
| use completeness variation in bad rings | yes | yes | yes | yes | yes | |
| output percentage of bad rings | yes | yes | yes | yes | yes | |
| downweight low resolution in bad rings | yes | yes | yes | yes | yes | |
| ccp4i2 | ctruncate task: moderate bad rings report | yes | yes | yes | yes | yes |
Update 7.0.033
Date: 17.03.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| coot | Release 0.8.8 | yes | yes | yes | - | - |
| Release 0.8.8 available as separate download from www.ccp4.ac.uk | - | - | - | yes | yes | |
| boost | add serialization module | yes | yes | yes | yes | yes |
Update 7.0.034
Date: 28.03.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | update to 1.4.5 | yes | yes | yes | yes | yes |
Update 7.0.035
Date: 05.04.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | Fixed Angstrom characters in DR pipeline | yes | yes | yes | yes | yes |
| lorestr | Feature - twin test not performed if Rfree}43%, Feature - saving twin, solvent, etc to the protocol file | yes | yes | yes | yes | yes |
| ccp4srs-python | CCP4SRS Python bindings can use mmdb Graph matching | yes | yes | yes | yes | yes |
| monomers | Added 1RZ, 61Q, 6NO, 6O1, 73M, 79E, 7E3, 7EE, 7JY, 7KL, D9P, KZH, OB9, ZS8 | yes | yes | yes | yes | yes |
| Atom name fixes in ERI, PHW | yes | yes | yes | yes | yes | |
| Replaced ALS | yes | yes | yes | yes | yes | |
| ccp4mg | Update to CCP4MG/MrBUMP interface to allow viewing multiple domains. Also adds a 1D visualization of the domains. | yes | yes | yes | yes | yes |
Update 7.0.036
Date: 11.04.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| mmdb2 | Fixed a bug in handling chains with numeric Id | yes | yes | yes | yes | yes |
| pointless | 1.11.1, make reindex/spacegroup options for merged data more robust to illicit transformations | yes | yes | yes | yes | yes |
| add extra data to XML for ccp4i2 | yes | yes | yes | yes | yes | |
| aimless | 0.5.32 some improved error reporting to XML. | yes | yes | yes | yes | yes |
| Added calculation of ISa, asymptotic I/sigI | yes | yes | yes | yes | yes | |
| ctruncate | 1.17.24 reduce warnings and work with negative mean Intensity | yes | yes | yes | yes | yes |
| pisa | Text output of interaction radar values added | yes | yes | yes | yes | yes |
Update 7.0.037
Date: 05.05.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | Update to 1.5.1 | yes | yes | yes | yes | yes |
| xia2 | Update to 0.5.277 | yes | yes | yes | yes | yes |
Update 7.0.038
Date: 08.05.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | missing files | - | - | yes | - | - |
| tidy of files | - | - | - | yes | yes | |
| ccp4i2 | updated mdm2 demo data | yes | yes | yes | yes | yes |
Update 7.0.039
Date: 23.05.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| crank2 | update to 2.0.146 | yes | yes | yes | yes | yes |
| new heavy atom location code prasa | yes | yes | yes | yes | yes | |
| sfcheck | cell format correction in cifile from mtz | yes | yes | yes | yes | yes |
| ccp4i2 | fix for lidia on linux | - | yes | yes | - | - |
| fix the MG picture is not drawn in the reports | yes | yes | yes | yes | yes | |
| updates form new crank2 | yes | yes | yes | yes | yes | |
| monomers | added 1N7, 2YR, 68O, 7EC, 8TS, HGD, OEY (poor), QUJ | yes | yes | yes | yes | yes |
| ccp4mg | fixes a minor issue drawing S-N bonds. | yes | yes | yes | yes | yes |
| ccp4-progs | rwcontents: accurate calculation of molecular weight | yes | yes | yes | yes | yes |
| acorn: increase tolerance to CELLCHK routine | yes | yes | yes | yes | yes |
Update 7.0.040
Date: 06.06.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| Molrep | bug fixes and improved EM map reading | yes | yes | yes | yes | yes |
| packing improvement | yes | yes | yes | yes | yes | |
| sfcheck | bug fixes and improved EM map reading | yes | yes | yes | yes | yes |
| ctruncate | 1.17.25, improve stability of Norm calculation | yes | yes | yes | yes | yes |
| clipper | additional none standard spacegroup settings | yes | yes | yes | yes | yes |
| mmdb2 | fixed a bug in function for forced element name correction, causing a major fault in SSM | yes | yes | yes | yes | yes |
| superpose | SSM update due to the corresponding bug fixes in MMDB | yes | yes | yes | yes | yes |
| ccp4mg | update to mrbump sequence allignment | yes | yes | yes | yes | yes |
Update 7.0.041
Date: 19.06.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| rdkit | update to 2017_03_2 | yes | yes | yes | yes | yes |
| acedrg | update for rdkit, bug fixes and updates | yes | yes | yes | yes | yes |
| ccp4i2 | update for new acedrg | yes | yes | yes | yes | yes |
| ccp4mg | recompile for new rdkit | yes | yes | yes | yes | yes |
| coot | recompile for new rdkit | yes | yes | yes | - | - |
Update 7.0.042
Date: 28.06.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | DIALS 1.6.0 (2017-06-02): | yes | yes | yes | yes | yes |
| dials/xia2: dynamic masking of diamond anvil cells for DLS I19-2 high pressure experiments JMP improvements to mosaic spread estimate (#342, #119) | yes | yes | yes | yes | yes | |
| DIALS 1.6.1 (2017-06-16): | yes | yes | yes | yes | yes | |
| dials.image_viewer: respect kernel_size parameter (#354) | yes | yes | yes | yes | yes | |
| Rayonix TIFF format fixes (#370) | yes | yes | yes | yes | yes | |
| DIALS 1.6.2 (2017-06-20): | yes | yes | yes | yes | yes | |
| cctbx algorithmic stability fixes (cctbx/cctbx_project#43) | yes | yes | yes | yes | yes | |
| dials.export_mtz: improved error messages (#357) | yes | yes | yes | yes | yes | |
| xia2 | xia2 0.5.319 (2017-06-02): | yes | yes | yes | yes | yes |
| new xia2.html | yes | yes | yes | yes | yes | |
| xia2 fixed for I23 data with distance != 0; xia2/xia2#124 and friends | yes | yes | yes | yes | yes | |
| xia2 0.5.325 (2017-06-14): | yes | yes | yes | yes | yes | |
| XDS compatibility fixes (xia2/xia2#131) | yes | yes | yes | yes | yes | |
| Trap non-fatal fatal error (xia2/xia2#115) | yes | yes | yes | yes | yes | |
| respect batch_range parameter in resolution determination | yes | yes | yes | yes | yes | |
| silence xtriage output | yes | yes | yes | yes | yes | |
| xia2 0.5.328 (2017-06-20): | yes | yes | yes | yes | yes | |
| Generate .p4p files in small molecule mode (xia2/xia2#134) | yes | yes | yes | yes | yes | |
| ccp4i2 | updates for new xia2 and dials | yes | yes | yes | yes | yes |
Update 7.0.043
Date: 24.07.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| pointless | 1.11.3 for XDS files, make batch headers within run even if there are no observations | yes | yes | yes | yes | yes |
| 1.11.2 Honour explicit run specification when there is a reference file | yes | yes | yes | yes | yes | |
| ccp4i | update to acedrg script | yes | yes | yes | yes | yes |
| acedrg | More algorithms added for valence checking and add/delete atoms | yes | yes | yes | yes | yes |
| lorestr | Fixed error in pdb download after RSCB PDB introduced SSL verification | yes | yes | yes | yes | yes |
| molrep | Phased Rotation Function improvement | yes | yes | yes | yes | yes |
| ccp4mg | Fixes the svg method of phmmerReport.py to not use any code which requires a QApplication rather than QCoreApplication | yes | yes | yes | yes | yes |
| cbuccaneer | 1.6.4 fixes a divide by zero error | yes | yes | yes | yes | yes |
| dials | DIALS 1.6.3 includes xia2 0.5.337 (2017-07-03): | yes | yes | yes | yes | yes |
| Many dials.export fixes, including exports from single images (#388) | yes | yes | yes | yes | yes | |
| xia2: Make d_min= command line parameter work again (xia2/xia2#136) | yes | yes | yes | yes | yes | |
| xia2: Avoid crash when running xtriage on centric data (xia2/xia2#139) | yes | yes | yes | yes | yes | |
| xia2: Move extra multiplicity files away from main directory (xia2/xia2#140) | yes | yes | yes | yes | yes | |
| xia2: Remove '.bat' from output file names when run on Windows | yes | yes | yes | yes | yes | |
| xia2: Improvements in HTML report (xia2/xia2#133, xia2/xia2#141) | yes | yes | yes | yes | yes | |
| xia2: xia2.strategy fixes | yes | yes | yes | yes | yes |
Update 7.0.044
Date: 10.08.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| arcimboldo | lite: added coiled coil mode | yes | yes | yes | - | - |
| ccp4i | fixed switching between hklin files with F and I | yes | yes | yes | yes | yes |
| ccp4-progs | PDBCUR to update | yes | yes | yes | yes | yes |
| crank2 | enantiomorphic spacegroup issue | yes | yes | yes | yes | yes |
| libg | semi-automated search modes added | yes | yes | yes | yes | yes |
| lorestr | CCP4i2 compatibility added | yes | yes | yes | yes | yes |
| mmdb2 | MMDB2 to update | yes | yes | yes | yes | yes |
| molrep | SAPTF improvement | yes | yes | yes | yes | yes |
Update 7.0.045
Date: 04.10.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| coot | correctsions to some typos | yes | yes | yes | - | - |
| shelxe | update to 2017_1 | yes | - | yes | yes | yes |
| improved chain tracing at lower than 2A resolution | yes | - | yes | yes | yes | |
| further details at http://shelx.uni-ac.gwdg.de/SHELX/changes.php | yes | - | yes | yes | yes | |
| Molrep | fix for bug in map read | yes | yes | yes | yes | yes |
| sfcheck | removed bug in reading ccp4 map | yes | yes | yes | yes | yes |
| pointless | 1.11.4 increase number of images from Scalepack file | yes | yes | yes | yes | yes |
| lorestr | fixed CCP4i2 compatibility issue with -p2 file names | yes | yes | yes | yes | yes |
| ctruncate | bug fixes, protect 0 value diagonal elements in hessian | yes | yes | yes | yes | yes |
| hklfile | bug fixes | yes | yes | yes | yes | yes |
| acedrg | bug fixes | yes | yes | yes | yes | yes |
| ccp4i2 | new nautilus interface | yes | yes | yes | yes | yes |
| lorestr: fixed difference map import | yes | yes | yes | yes | yes | |
| crank2: fixes for specific space groups | yes | yes | yes | yes | yes | |
| arpwarp: added output xyz with dummy atoms removed | yes | yes | yes | yes | yes | |
| added task interface for morda-mp | yes | yes | yes | yes | yes | |
| ccp4i | jsrview set as the default viewer for crank2 | yes | yes | yes | yes | yes |
| fixed termination of subprocesses | yes | yes | yes | yes | yes | |
| morda-mp | released python wrapper and i1 interface | yes | yes | yes | yes | yes |
| crank2 | disabling ccp4i jsrview pop-up | yes | yes | yes | yes | yes |
| prasa fine-tuning | yes | yes | yes | yes | yes | |
| fixes for specific space groups | yes | yes | yes | yes | yes | |
| fixed flip-mem variant of charge flipping | yes | yes | yes | yes | yes |
Update 7.0.046
Date: 13.11.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | dilas 1.7.2 | yes | yes | yes | yes | yes |
| xia2 0.5.436 | yes | yes | yes | yes | yes | |
| acedrg | bug fixes | yes | yes | yes | yes | yes |
| refmac5 | bug fixes | yes | yes | yes | yes | yes |
| simbad | contaminant search | yes | yes | yes | yes | yes |
| new sequence-free MR pipeline | yes | yes | yes | yes | yes | |
| ccp4i | New: simbad inteface | yes | yes | yes | yes | yes |
| updated aimless interface | yes | yes | yes | yes | yes |
Update 7.0.047
Date: 04.12.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| panddas | update to 2.11 | yes | yes | yes | - | - |
| Molrep | PFMOD correction | yes | yes | yes | yes | yes |
| pointless | 1.11.6 | yes | yes | yes | yes | yes |
| 1.11.5 bug fix for multi lattice data | yes | yes | yes | yes | yes | |
| ccp4i2 | fixes in molrep interface | yes | yes | yes | yes | yes |
| edstats | new version | yes | yes | yes | yes | yes |
| ccp4i | lorestr: fix for interface | yes | yes | yes | yes | yes |
| monomers | add 0WD,2Q5,6G6,6ZL,79F,7K9,8LL,9Q8,FJI,OMZ,QUJ,QVE,RU2,YY9 | yes | yes | yes | yes | yes |
| Format fix: CPN,CPO,DEF,GCR,IMF,QPT | yes | yes | yes | yes | yes | |
| Replace: UAP | yes | yes | yes | yes | yes | |
| ccp4mg | fixes bug which causes MG/MrBUMP to not work for many sequences | yes | yes | yes | yes | yes |
| update for https access to PDBe | yes | yes | yes | yes | yes | |
| mmdb2 | False "duplicate sequence number" error in case of short residue names | yes | yes | yes | yes | yes |
| numpy | update to 1.12.1 | yes | yes | yes | - | - |
| scipy | update to 1.16.1 | yes | yes | yes | - | - |
Update 7.0.048
Date: 24.12.17
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | dials 1.8.2 | yes | yes | yes | yes | yes |
| xia2 0.5.469 | yes | yes | yes | yes | yes | |
| monomers | correction of GNP | yes | yes | yes | yes | yes |
| pointless | 1.11.7: fix for problem with XDS input with missing batches | yes | yes | yes | yes | yes |
| molrep | fitting a model into EM map improvements | yes | yes | yes | yes | yes |
| sfcheck | reading EM map correction | yes | yes | yes | yes | yes |
| arcimboldo | fix to ARCIMBOLDO_BORGES | yes | yes | yes | - | yes |
| shelx | }updated shelxe | yes | - | yes | yes | yes |
| updated shelxl | yes | - | yes | yes | yes | |
| support ended for shelxe | - | yes | - | - | - | |
| pdb2ins - new input creation for shelxl | yes | - | yes | - | yes |
Update 7.0.049
Date: 15.01.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | Ample interface | yes | yes | yes | yes | yes |
| Simbad interface | yes | yes | yes | - | - | |
| Added larger fonts for high res displays | yes | yes | yes | yes | yes | |
| pointless | 1.11.8 | yes | yes | yes | yes | yes |
| aimless | 0.6.1 | yes | yes | yes | yes | yes |
| ctruncate | corrections for moments plots | yes | yes | yes | yes | yes |
| ample | 1.4.0 | yes | yes | yes | yes | yes |
| simbad | 0.1.8 | yes | yes | yes | - | - |
| jsrview | general update | yes | yes | yes | yes | yes |
Update 7.0.050
Date: 17.01.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| coot | 0.8.9 | yes | yes | yes | - | - |
| aimless | 0.6.2 | yes | yes | yes | yes | yes |
Update 7.0.051
Date: 09.02.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| phaser | 2.8.2 | yes | yes | yes | yes | yes |
| ccp4i | updates for phaser 2.8 | yes | yes | yes | yes | yes |
| arcimboldo | updates for phaser 2.8 | yes | yes | yes | yes | yes |
| ample | update to 1.4.1 | yes | yes | yes | yes | yes |
| simbad | update to 0.1.10 | yes | yes | yes | - | - |
| dials | update to 1.8.4 | yes | yes | yes | yes | yes |
| ccp4i | update for ample | yes | yes | yes | yes | yes |
Update 7.0.052
Date: 28.02.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | Numerous bug fixes, improvments to stability, speed and efficiency | yes | yes | yes | yes | yes |
| New: Arcimboldo | yes | yes | yes | - | - | |
| New: Simbad | yes | yes | yes | - | - | |
| New: Ample | yes | yes | yes | yes | yes | |
| Enhancements to existing interfaces | yes | yes | yes | yes | yes | |
| New crystal definition and interface introduced | yes | yes | yes | yes | yes |
Update 7.0.053
Date: 19.03.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4mg | fix issues with some refmac output | yes | yes | yes | yes | yes |
| pointless | update to 1.11.10, read nXDS files | yes | yes | yes | yes | yes |
| buccaneer | Bug fixes | yes | yes | yes | yes | yes |
| refmac | Bug fixes and speed enhancements | yes | yes | yes | yes | yes |
| crank2 | Bug fixes and enhancements | yes | yes | yes | yes | yes |
| arcimboldo | Bug fixes | yes | yes | yes | yes | yes |
| molrep | Bug fies | yes | yes | yes | yes | yes |
| fragon | 0.1.0, MR pipeline | yes | yes | yes | - | - |
| acedrg | New features and bug fixes | yes | yes | yes | yes | yes |
| rabdam | radition damage detection, command line only | yes | yes | yes | yes | yes |
| clipper | bug fix in mtz writing routine | yes | yes | yes | yes | yes |
| morda | database update 21 | yes | yes | yes | yes | yes |
Update 7.0.054
Date: 29.03.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| shelxe | bug fixes | yes | yes | yes | yes | yes |
| correction to shelxe NCS code | yes | yes | yes | yes | yes | |
| monomers | additional ligands | yes | yes | yes | yes | yes |
| simbad | lattice and contaminant search | - | - | - | yes | yes |
| ccp4i2 | new auspex interface | yes | yes | yes | yes | yes |
| new simbad interface | - | - | - | yes | yes | |
| updated refmac interface | yes | yes | yes | yes | yes | |
| updated lorestr interface | yes | yes | yes | yes | yes | |
| updates arpwarp interface | yes | yes | yes | - | - | |
| mosflm | ipmosflm 7.2.2 | yes | yes | yes | yes | yes |
| imosflm 7.2.2 | yes | yes | yes | yes | yes | |
| arcimboldo | update for new shelxe | yes | yes | yes | - | - |
| refmac | fixed output coordinates in mmcif file | yes | yes | yes | yes | yes |
Update 7.0.055
Date: 16.04.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| coot | 0.8.9.1 | yes | yes | yes | - | - |
| xssp | 3.0.0 | yes | yes | yes | yes | yes |
| rabdam | Bug fixes | yes | yes | yes | yes | yes |
| srs | synchronise to monomer library | yes | yes | yes | yes | yes |
| ccp4i2 | workaround for batch file launch issues | - | - | - | yes | yes |
Update 7.0.056
Date: 27.04.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| monomers | corrections for ASN etc | yes | yes | yes | yes | yes |
| dui | New interface for DIALS | yes | yes | yes | yes | yes |
| cctbx | Update to 2018 January | yes | yes | yes | yes | yes |
| phaser | Update to 2.8.2 | yes | yes | yes | yes | yes |
| dials | Update to 1.9.2 | yes | yes | yes | yes | yes |
| xia2 | Update to 0.5.542 | yes | yes | yes | yes | yes |
| aimless | Update to 0.7.1 | yes | yes | yes | yes | yes |
| ccp4i | correction to phaser atom search interface | yes | yes | yes | yes | yes |
| imosflm | correction to running of pointless and aimless | - | - | - | yes | yes |
| ccp4i2 | updated xia2 interfaces | yes | yes | yes | yes | yes |
Update 7.0.057
Date: 09.05.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| coot | Minor fixes | yes | yes | yes | - | - |
| pointless | update to 1.11.12 | yes | yes | yes | yes | yes |
| dui | workaround for FPE issue | yes | yes | yes | yes | yes |
| ccp4i | phaser MR interface update | yes | yes | yes | yes | yes |
| mrbump interface update | yes | yes | yes | yes | yes | |
| ccp4i2 | crank2 interface update | yes | yes | yes | yes | yes |
| refmac inteface update | yes | yes | yes | yes | yes | |
| lorestr interface update | yes | yes | yes | yes | yes | |
| prosmart inteface update | yes | yes | yes | yes | yes | |
| mrbump | update | yes | yes | yes | yes | yes |
| truncate | serious issue with F/sigF (thanks Global Phasing team for fix) | yes | yes | yes | yes | yes |
Update 7.0.058
Date: 08.06.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | bug fixes | yes | yes | yes | yes | yes |
| ccp4mg | fix for atom picking issue | yes | yes | yes | yes | yes |
| dials | update to 1.9.3 | yes | yes | yes | yes | yes |
| aimless | Bug fixes | yes | yes | yes | yes | yes |
| ctruncate | Bug fixes | yes | yes | yes | yes | yes |
| refmac5 | fixes for conn issue and mask issue | yes | yes | yes | yes | yes |
| increased stacksize for EM maps | yes | - | - | - | - | |
| ample | update to 1.4.4 | yes | yes | yes | yes | yes |
| arcimboldo | fixes to Borges and Shredder | yes | yes | yes | - | - |
| panddas | update to 0.2.12, runs with new cctbx | yes | yes | yes | - | - |
Update 7.0.059
Date: 03.07.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| crank2 | various fixes and updates | yes | yes | yes | yes | yes |
| ccp4i | updates to crank2 interface | yes | yes | yes | yes | yes |
| coot | fix for his-flip issues | yes | yes | yes | - | - |
| phaser | removal of .git directory, FPE issues | yes | - | - | - | - |
| ccp4i2 | fix for cache files | yes | yes | yes | yes | yes |
| updates to crank2 interface | yes | yes | yes | yes | yes | |
| enum34 | updated support library in python | yes | yes | yes | yes | yes |
Update 7.0.060
Date: 11.07.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| molrep | fix for z-score output | yes | yes | yes | yes | yes |
| pointless | update to 1.11.14 | yes | yes | yes | yes | yes |
| aimless | update to 0.7.2 | yes | yes | yes | yes | yes |
| fragon | update to 0.1.1 | yes | yes | yes | - | - |
| custom fragment option in CCP4i2 | yes | yes | yes | - | - | |
| acedrg | Bug fixes, corrections to LINK generation mode | yes | yes | yes | yes | yes |
| rabdam | update to 1.3.0 | yes | yes | yes | yes | yes |
Update 7.0.061
Date: 15.08.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | update to 1.10.4 | yes | yes | yes | yes | yes |
| xia2 | update to 0.5.582 | yes | yes | yes | yes | yes |
| ccp4i2 | updates for updated xia2 and dials | yes | yes | yes | yes | yes |
| molprobity | New: molprobity from Richardson Lab | yes | yes | yes | yes | yes |
| Many thanks to Jane Richardson and Nigel Moriarty | yes | yes | yes | yes | yes | |
| lorestr | Use of bundled molprobity | yes | yes | yes | yes | yes |
Update 7.0.062
Date: 31.08.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| monomers | major overhaul | yes | yes | yes | yes | yes |
| over 7000 new entries and 8000 updates | yes | yes | yes | yes | yes | |
| morda | Update to release 0.23 | yes | yes | yes | - | - |
| buccaneer | New EM reference structure | yes | yes | yes | yes | yes |
| refmac | update for new monomer library | yes | yes | yes | yes | yes |
Update 7.0.063
Date: 25.09.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | integration of dials gui and dials viewers | yes | yes | yes | yes | yes |
| molprobity validation task | yes | yes | yes | yes | yes | |
| dials-gui | updates for dials 1.10 | yes | yes | yes | yes | yes |
| aimless | update to 0.7.3 | yes | yes | yes | yes | yes |
| dimple | bug fixes | yes | yes | yes | yes | yes |
| crank2 | bug fixes | yes | yes | yes | yes | yes |
| morda | update to v.24 | yes | yes | yes | - | - |
Update 7.0.064
Date: 15.10.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | update to 1.11.2 | yes | yes | yes | yes | yes |
| xia2 | update to 0.5.653 | yes | yes | yes | yes | yes |
| phaser | update to 2.8.2 | yes | yes | yes | yes | yes |
Update 7.0.065
Date: 19.10.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ARP/wARP | released version 8.0 | yes | yes | yes | - | - |
| refmac5 | correction to LINK records | yes | yes | yes | yes | yes |
| ccp4-progs | contact: increase MaxSelectedResidues | yes | yes | yes | yes | yes |
| dials | inclusion of mock module | yes | yes | yes | yes | yes |
| pointless | update to 1.11.6 | yes | yes | yes | yes | yes |
| rabdam | update to 1.4.1 | yes | yes | yes | yes | yes |
| crank2 | update with fixes and improvements | yes | yes | yes | yes | yes |
| documentation | correction to freerflag documentation | yes | yes | yes | yes | yes |
Update 7.0.066
Date: 18.11.18
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| pointless | 1.11.17 fix for ambiguous Laue group result | yes | yes | yes | yes | yes |
| arcimboldo | some fixes to output, for P1 space group and for BORGES. | yes | yes | yes | - | - |
| rabdam | update to 1.5.1 | yes | yes | yes | yes | yes |
| crank2 | Bug fixes | yes | yes | yes | yes | yes |
| lorestr | LIBG for DNA/RNA restraints added | yes | yes | yes | yes | yes |
| morda | database update | yes | yes | yes | - | - |
| ipmosflm | reapply 7.2.2 update | - | - | - | yes | yes |
| fragon | update to 0.2.2 | yes | yes | yes | yes | yes |
| ccp4i2 | update to crank2 | yes | yes | yes | yes | yes |
| bug fixes to nautilus pipeline | yes | yes | yes | yes | yes | |
| bug fixes to sequence import | yes | yes | yes | yes | yes |
Update 7.0.067
Date: 07.01.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | workaround for old matplotlib | yes | yes | yes | yes | yes |
| cctbx | missing cma_es included | yes | yes | yes | yes | yes |
| shelxe | updated binary | yes | yes | yes | yes | yes |
| zanuda | bug fixes | yes | yes | yes | yes | yes |
Update 7.0.068
Date: 30.01.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| morda | update to 0.27 | yes | yes | yes | - | - |
| pointless | update to 1.11.19 | yes | yes | yes | yes | yes |
| aimless | update to 0.7.4 | yes | yes | yes | yes | yes |
| fragon | update to 0.2.4 | yes | yes | yes | yes | yes |
| dials-gui | major update | yes | yes | yes | yes | yes |
| ample | update to 1.4.6 | yes | yes | yes | yes | yes |
| simbad | update to 0.1.14 | yes | yes | yes | yes | yes |
| mrbump | update | yes | yes | yes | yes | yes |
| monomers | add 78M, DV3, TTW, 9JJ, 9K4, C4W, F6Q, F7T, OL3 HGN, 9JM | yes | yes | yes | yes | yes |
| update CMO, OXY, KPI, 85Y, NGZ, GL0 | yes | yes | yes | yes | yes | |
| ccp4i2 | update to simbad interface for simbad 0.1.14 | yes | yes | yes | yes | yes |
Update 7.0.069
Date: 15.02.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i2 | updated validate protein interface | yes | yes | yes | yes | yes |
| updated buccaneer interface | yes | yes | yes | yes | yes | |
| updated refmac interface | yes | yes | yes | yes | yes | |
| updated crank2 interface | yes | yes | yes | yes | yes | |
| crank2 | bug fixes and updates | yes | yes | yes | yes | yes |
| ccp4i | updated crank2 interface | yes | yes | yes | yes | yes |
| dials | update to 1.12.5 | yes | yes | yes | yes | yes |
| xia2 | update to xia2 0.5.769 | yes | yes | yes | yes | yes |
Update 7.0.070
Date: 19.02.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ARP/wARP | version 8.0 patch 1 | yes | yes | yes | - | - |
| -- Large structures up to 50,000 residues can now be handled; within this limit the number of NCS-related copies can be up to 1000 | yes | yes | yes | - | - | |
| -- Both main-chain and side-chain building steps are now considerably faster for large structures | yes | yes | yes | - | - | |
| -- Output file names are customisable | yes | yes | yes | - | - | |
| -- Ligand validation using LigEnergy is added to all ligand-building protocols | yes | yes | yes | - | - | |
| -- Various bugs fixed in protein model building (both for MX and cryo-EM) and ligand building | yes | yes | yes | - | - | |
| -- Example files have been updated | yes | yes | yes | - | - | |
| morda | update to v.28 | yes | yes | yes | - | - |
| ccp4i2 | reinstate missing cache file | yes | yes | yes | yes | yes |
Update 7.0.071
Date: 21.02.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| molprobity | restore full functionality | yes | yes | yes | yes | yes |
Update 7.0.072
Date: 15.03.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| simbad | Update from version 0.1.14 to version 0.1.16 | yes | yes | yes | yes | yes |
| ccp4i2 | fix for lidia | - | - | - | yes | yes |
| ccp4i | find_wincoot unified with the one in installer | - | - | - | yes | yes |
| phaser_MR reinstate fix for I/F selector | yes | yes | yes | yes | yes | |
| crank2 | fix for ccp4i | yes | yes | yes | yes | yes |
| dimple | added option to generate anomalous difference maps | yes | yes | yes | yes | yes |
| acedrg | new utility: dictionary accumulator | yes | yes | yes | yes | yes |
| bug fixes | yes | yes | yes | yes | yes | |
| ccp4-base | fix for lidia in ccp4i2 | - | - | - | yes | yes |
| add WinCoot\lib to PATH which will be needed for coot-0.8.9.2 | - | - | - | yes | yes | |
| panddas | update from version 0.12.22 to version 0.12.24 | yes | yes | yes | - | - |
Update 7.0.073
Date: 16.04.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| molrep | multi_copy_search improvement | yes | yes | yes | yes | yes |
| new keyword RMV | yes | yes | yes | yes | yes | |
| lorestr | a few fixes and improvements | yes | yes | yes | yes | yes |
| integration with CCP4 Cloud | yes | yes | yes | yes | yes | |
| crank2 | bug fix | yes | yes | yes | yes | yes |
| sftools | a few improvements | yes | yes | yes | yes | yes |
| coot | 0.8.9.2 | yes | yes | yes | - | - |
| WinCoot | 0.8.9.2 | - | - | - | yes | yes |
Update 7.0.074
Date: 31.05.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| wincoot | minor fixes | - | - | - | yes | yes |
| phaser | update to 2.8.3 | yes | yes | yes | yes | yes |
| Xia2 | update to release 0.5.893 | yes | yes | yes | yes | yes |
| dials | update to release 1.14.5 | yes | yes | yes | yes | yes |
| pointless | update to 1.21.1 | yes | yes | yes | yes | yes |
| ccp4i2 | updated xia2-dials interface | yes | yes | yes | yes | yes |
Update 7.0.075
Date: 12.06.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| Molrep | Bug fixes | yes | yes | yes | yes | yes |
| dui | Update for dials 1.14.X | yes | yes | yes | yes | yes |
| lorestr | EM features | yes | yes | yes | yes | yes |
| clipper | Electron scattering form factors | yes | yes | yes | yes | yes |
| edstats | Ability to read mmcif files | yes | yes | yes | yes | yes |
| coot | bug fixes | yes | yes | yes | - | - |
| acedrg | Bug fixes | yes | yes | yes | yes | yes |
| sfcheck | Ability to read mmcif files | yes | yes | yes | yes | yes |
Update 7.0.076
Date: 28.06.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| Refmac | Output of mmcif for deposition | yes | yes | yes | yes | yes |
| ccp4i2 | Update to deposition task | yes | yes | yes | yes | yes |
| Update to MR.BUMP task | yes | yes | yes | yes | yes |
Update 7.0.077
Date: 12.09.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| ccp4i | updated xia2 interface | yes | yes | yes | yes | yes |
| crank2 | bug fixes | yes | yes | yes | yes | yes |
| ccp4i2 | updated refmac, crank2 and deposition interfaces | yes | yes | yes | yes | yes |
| coot | fix for alternative confomer refinement issue | yes | yes | yes | yes | yes |
| mrbump | New feature: SG search fix and other fixes | yes | yes | yes | yes | yes |
| simbad | upates niggli cell and contaminants databases | yes | yes | yes | yes | yes |
| refmac5 | fix for deposition issue | yes | yes | yes | yes | yes |
Update 7.0.078
Date: 15.11.19
| Component | Description | Mac OS 64-bit | Linux 32-bit | Linux 64-bit | Windows 32-bit | Windows 64-bit |
|---|---|---|---|---|---|---|
| dials | update to release 1.14.12 | yes | yes | yes | yes | yes |
| dui | fixes in layout and behaviour | yes | yes | yes | yes | yes |
| ccp4i2 | changes in the DUI interface plus various fixes and improvements | yes | yes | yes | yes | yes |
| refmac5 | fix mmcif-related bug | yes | yes | yes | yes | yes |
| coot | updates for downloading files using https | yes | yes | yes | - | - |
Reporting bugs
All bugs should be reported to ccp4@ccp4.ac.uk.