CCP4 7.1 Updates

Update packages

The tarballs linked to this page are for use with CCP4 updater (ccp4um) in off-line mode (e.g. without network connection). You do not need them if your CCP4 update works normally through the internet.

Follow instructions below if you do intend to use the CCP4 updater in off-line mode.

Linux, Mac OS X

1. Download and uncompress the appropriate update directory:

2. Start Update Manager from the command line as follows:

ccp4um -d full-path-to-update-directory

Windows

1. Download and uncompress the appropriate update directory:

2. Double-click on CCP4-Console icon on the Desktop
3. Start Update Manager from CCP4-Console as in Example below.

Example

The full path to downloaded and unzipped update directory:

C:\Users\Andrey\Downloads\ccp4-7.1-updates-win64

The command to run in CCP4-Console:

ccp4um -d C:\Users\Andrey\Downloads\ccp4-7.1-updates-win64

An issue with double occurrence of ccp4-7.1-updates-win64 in the folder path.

There are several ways of performing step (1). One of them is to download the zip-archive, right mouse click on the archive icon and select Extract All… from the menu. The Extract window opens with the default destination path ending with ccp4-7.1-updates-win64. With such a default, the path to update folder will have two occurrences of ccp4-7.1-updates-win64 in it, for example:

C:\Users\Andrey\Downloads\ccp4-7.1-updates-win64\ccp4-7.1-updates-win64

Correct URI in (3) accordingly in such a case or move the internal folder to a more convenient location.

Known issues with Update Manager

  1. Issue: CCP4 Cloud does not start on macOS Big Sur 

    Solution: apply CCP4 Update 010 or higher
     

  2. Issue: Screen Time (macOS Catalina or above) has been found to block the installation and updates of CCP4 in various ways. It may block all files from CCP4 websites while displaying a warning page, or it may block individual files and you will see CCP4 Setup Manager or Update Manager complain of a checksum mismatch. 

    Solution: we recommend switching Screen Time off completely during the CCP4 installation and update processes. 

Reporting bugs

All bugs should be reported to ccp4@stfc.ac.uk.

Update summaries

Update 7.1.001

Date: 02.06.20

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
dialsupdate to 2.2.4yesyesyesyes
pointlessupdatedyesyesyesyes
arcimboldoupdateyesyesyes-
alixe and sequence_slideryesyesyes-
ccp4i2various task and interface fixesyesyesyesyes
python3 compatibilityyesyesyesyes
ccp4cloudupdate to 1.6.011yesyesyesyes
critical refmac issueyesyesyesyes
updated to version 1.7.001-yes--
monomersvarious fixes and updatesyesyesyesyes
fragonupdate to 0.2.6yesyesyesyes

Update 7.1.002

Date: 02.07.20

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
cootpng based printingyesyesyes-
NCS map bug fixesyesyesyesyes
locale set to en_US---yes
buccaneerupdate to 1.16.9yesyesyesyes
ccp4cloudupdated to version 1.6.012yesyesyesyes
ccp4mgfix for CIF browseryesyesyesyes
clipperminor updateyesyesyesyes
dialsupdated to version 2.2.5yesyesyesyes
phaserbug fixesyesyesyesyes
ccp4i2updates and bug fixesyesyesyesyes
mordaupdated to version 33yesyesyes-

Update 7.1.003

Date: 11.08.20

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
arcimboldoupdateyesyesyes-
refmacupdate and bug fixesyesyesyesyes
pointlessupdate to 1.12.2yesyesyesyes
cootcoot schemeing fixesyesyesyesyes
csheetbendupdateyesyesyesyes
jligandimproved interaction with acedrgyesyesyesyes
ccp4cloudupdated to version 1.6.013yesyesyesyes
ccp4i2updateyesyesyesyes
replacement ASU taskyesyesyesyes

Update 7.1.004

Date: 12.09.20

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
monomers5569 new entriesyesyesyesyes
refmacupdate and bug fixesyesyesyesyes
ampleupdate to 1.5.3yesyesyesyes
csheetbendupdateyesyesyesyes
molrepresmax_used improvementyesyesyesyes
sfcheckimproved resmax calculationyesyesyesyes
lorestrimproved for smaller fragmentsyesyesyesyes
ccp4i2updateyesyesyesyes
integration of csheetbend into many pipelinesyesyesyesyes
ccp4cloudupdated to version 1.6.014yesyesyesyes

Update 7.1.005

Date: 16.10.20

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
ccp4-progsemergency fix to buccaneer and nautilus pipelinesyesyesyesyes
pisaemergency fixyesyesyesyes
ccp4cloudupdated to version 1.6.015yesyesyesyes
mordaupdated to version 35yesyesyes-

Update 7.1.006

Date: 16.10.20

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
ccp4ifixed switching between hklin files with F and Iyesyesyesyes
arcimboldo lite: added coiled coil modeyesyesyes-
ccp4-progsPDBCUR to updateyesyes--

Update 7.1.007

Date: 23.10.20

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
cootupdate to 0.9.1yesyesyes-
mordaupdate to 0.37yesyesyes-
monomersadditions and correctionsyesyesyesyes

Update 7.1.008

Date: 08.11.20

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
mrparseupdate to 0.1.8yesyesyesyes
simbadupdate to 0.2.2yesyesyesyes
ampleupdate to 0.1.8yesyesyesyes
monomerscorrectionyesyesyesyes
ccp4cloudupdated to version 1.6.016yesyesyesyes
ccp4i2fix to depositionyesyesyesyes

Update 7.1.009

Date: 04.12.20

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
cootupdate to 0.9.3yesyesyes-
ccp4cloudupdated to version 1.6.017yesyesyesyes
ccp4i2updated mrbump interfaceyesyesyesyes
updated documntationyesyesyesyes
ccp4mgupdated mr-model generationyesyesyesyes
mrbumpupdated search and bug fixesyesyesyesyes
mordaupdated domainsyesyesyes-

Update 7.1.010

Date: 12.01.21

Component Description Mac OS 64-bitLinux 64-bitLinux AMD 64-bit (legacy)Windows 64-bit
dialsupdated to version 2.2.10yesyesyesyes
pointlessupdated to version 1.12.4yesyesyesyes
mordaupdated to version 40yesyesyes-
ccp4cloudupdated to version 1.6.018yesyesyesyes
csheetbendupdated to version 0.4.2yesyesyesyes

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