Table of Contents
Update packages
The tarballs linked to this page are for use with CCP4 updater (ccp4um) in off-line mode (e.g. without network connection). You do not need them if your CCP4 update works normally through the internet.
Follow instructions below if you do intend to use the CCP4 updater in off-line mode.
Linux, Mac OS X
1. Download and uncompress the appropriate update directory:
2. Start Update Manager from the command line as follows:
ccp4um -d full-path-to-update-directoryWindows
1. Download and uncompress the appropriate update directory:
2. Double-click on CCP4-Console icon on the Desktop
3. Start Update Manager from CCP4-Console as in Example below.
Example
The full path to downloaded and unzipped update directory:
C:\Users\Andrey\Downloads\ccp4-7.1-updates-win64The command to run in CCP4-Console:
ccp4um -d C:\Users\Andrey\Downloads\ccp4-7.1-updates-win64An issue with double occurrence of ccp4-7.1-updates-win64 in the folder path.
There are several ways of performing step (1). One of them is to download the zip-archive, right mouse click on the archive icon and select Extract All… from the menu. The Extract window opens with the default destination path ending with ccp4-7.1-updates-win64. With such a default, the path to update folder will have two occurrences of ccp4-7.1-updates-win64 in it, for example:
C:\Users\Andrey\Downloads\ccp4-7.1-updates-win64\ccp4-7.1-updates-win64Correct URI in (3) accordingly in such a case or move the internal folder to a more convenient location.
Known issues with Update Manager
-
Issue: CCP4 Cloud does not start on macOS Big Sur
Solution: apply CCP4 Update 010 or higher -
Issue: Screen Time (macOS Catalina or above) has been found to block the installation and updates of CCP4 in various ways. It may block all files from CCP4 websites while displaying a warning page, or it may block individual files and you will see CCP4 Setup Manager or Update Manager complain of a checksum mismatch.
Solution: we recommend switching Screen Time off completely during the CCP4 installation and update processes.
Reporting bugs
All bugs should be reported to ccp4@ccp4.ac.uk.
Update summaries
Update 7.1.001
Date: 02.06.20
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| dials | update to 2.2.4 | yes | yes | yes | yes |
| pointless | updated | yes | yes | yes | yes |
| arcimboldo | update | yes | yes | yes | - |
| alixe and sequence_slider | yes | yes | yes | - | |
| ccp4i2 | various task and interface fixes | yes | yes | yes | yes |
| python3 compatibility | yes | yes | yes | yes | |
| ccp4cloud | update to 1.6.011 | yes | yes | yes | yes |
| critical refmac issue | yes | yes | yes | yes | |
| updated to version 1.7.001 | - | yes | - | - | |
| monomers | various fixes and updates | yes | yes | yes | yes |
| fragon | update to 0.2.6 | yes | yes | yes | yes |
Update 7.1.002
Date: 02.07.20
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| coot | png based printing | yes | yes | yes | - |
| NCS map bug fixes | yes | yes | yes | yes | |
| locale set to en_US | - | - | - | yes | |
| buccaneer | update to 1.16.9 | yes | yes | yes | yes |
| ccp4cloud | updated to version 1.6.012 | yes | yes | yes | yes |
| ccp4mg | fix for CIF browser | yes | yes | yes | yes |
| clipper | minor update | yes | yes | yes | yes |
| dials | updated to version 2.2.5 | yes | yes | yes | yes |
| phaser | bug fixes | yes | yes | yes | yes |
| ccp4i2 | updates and bug fixes | yes | yes | yes | yes |
| morda | updated to version 33 | yes | yes | yes | - |
Update 7.1.003
Date: 11.08.20
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| arcimboldo | update | yes | yes | yes | - |
| refmac | update and bug fixes | yes | yes | yes | yes |
| pointless | update to 1.12.2 | yes | yes | yes | yes |
| coot | coot schemeing fixes | yes | yes | yes | yes |
| csheetbend | update | yes | yes | yes | yes |
| jligand | improved interaction with acedrg | yes | yes | yes | yes |
| ccp4cloud | updated to version 1.6.013 | yes | yes | yes | yes |
| ccp4i2 | update | yes | yes | yes | yes |
| replacement ASU task | yes | yes | yes | yes |
Update 7.1.004
Date: 12.09.20
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| monomers | 5569 new entries | yes | yes | yes | yes |
| refmac | update and bug fixes | yes | yes | yes | yes |
| ample | update to 1.5.3 | yes | yes | yes | yes |
| csheetbend | update | yes | yes | yes | yes |
| molrep | resmax_used improvement | yes | yes | yes | yes |
| sfcheck | improved resmax calculation | yes | yes | yes | yes |
| lorestr | improved for smaller fragments | yes | yes | yes | yes |
| ccp4i2 | update | yes | yes | yes | yes |
| integration of csheetbend into many pipelines | yes | yes | yes | yes | |
| ccp4cloud | updated to version 1.6.014 | yes | yes | yes | yes |
Update 7.1.005
Date: 16.10.20
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| ccp4-progs | emergency fix to buccaneer and nautilus pipelines | yes | yes | yes | yes |
| pisa | emergency fix | yes | yes | yes | yes |
| ccp4cloud | updated to version 1.6.015 | yes | yes | yes | yes |
| morda | updated to version 35 | yes | yes | yes | - |
Update 7.1.006
Date: 16.10.20
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| ccp4i | fixed switching between hklin files with F and I | yes | yes | yes | yes |
| arcimboldo lite: added coiled coil mode | yes | yes | yes | - | |
| ccp4-progs | PDBCUR to update | yes | yes | - | - |
Update 7.1.007
Date: 23.10.20
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| coot | update to 0.9.1 | yes | yes | yes | - |
| morda | update to 0.37 | yes | yes | yes | - |
| monomers | additions and corrections | yes | yes | yes | yes |
Update 7.1.008
Date: 08.11.20
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| mrparse | update to 0.1.8 | yes | yes | yes | yes |
| simbad | update to 0.2.2 | yes | yes | yes | yes |
| ample | update to 0.1.8 | yes | yes | yes | yes |
| monomers | correction | yes | yes | yes | yes |
| ccp4cloud | updated to version 1.6.016 | yes | yes | yes | yes |
| ccp4i2 | fix to deposition | yes | yes | yes | yes |
Update 7.1.009
Date: 04.12.20
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| coot | update to 0.9.3 | yes | yes | yes | - |
| ccp4cloud | updated to version 1.6.017 | yes | yes | yes | yes |
| ccp4i2 | updated mrbump interface | yes | yes | yes | yes |
| updated documntation | yes | yes | yes | yes | |
| ccp4mg | updated mr-model generation | yes | yes | yes | yes |
| mrbump | updated search and bug fixes | yes | yes | yes | yes |
| morda | updated domains | yes | yes | yes | - |
Update 7.1.010
Date: 12.01.21
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| dials | updated to version 2.2.10 | yes | yes | yes | yes |
| pointless | updated to version 1.12.4 | yes | yes | yes | yes |
| morda | updated to version 40 | yes | yes | yes | - |
| ccp4cloud | updated to version 1.6.018 | yes | yes | yes | yes |
| csheetbend | updated to version 0.4.2 | yes | yes | yes | yes |
Update 7.1.011
Date: 18.02.21
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| ccp4i2 | various bug fixes | yes | yes | yes | yes |
| mrbump | update to version 2.2.1 | yes | yes | yes | yes |
| ccp4cloud | updated to version 1.6.019 | yes | yes | yes | yes |
| coot | update to version 0.9.4.1 | yes | yes | yes | yes |
| acedrg | update to version 222 | yes | yes | yes | yes |
| phaser | update for ARCIMBOLDO | yes | yes | yes | yes |
| arcimboldo | multicopy, shredder bug fix | yes | yes | yes | - |
Update 7.1.012
Date: 12.03.21
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| ccp4cloud | update to version 1.6.020 | yes | yes | yes | yes |
| pointless | update to version 1.12.8 | yes | yes | yes | yes |
| ccp4i2 | various updates | yes | yes | yes | yes |
| various bugfixes | yes | yes | yes | yes | |
| simbad | update to version 0.2.3 | yes | yes | yes | yes |
| ample | update to version 1.5.5 | yes | yes | yes | yes |
| crank2 | update to version 2.0.279 | yes | yes | yes | yes |
| mrbump | update to version 2.2.2 | yes | yes | yes | yes |
Update 7.1.013
Date: 14.04.21
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| arcimboldo | update | yes | yes | yes | - |
| qtpisa | fixed command-line arguments | yes | yes | yes | yes |
| coot | update to version 0.9.5 | yes | yes | yes | - |
| ccp4cloud | update to version 1.6.021 | yes | yes | yes | yes |
| mrbump | update to version 2.2.3 | yes | yes | yes | yes |
Update 7.1.014
Date: 25.05.21
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| ccp4cloud | update to version 1.6.022 | yes | yes | yes | yes |
| simbad | update to version 0.2.4 | yes | yes | yes | yes |
| pointless | update to version 1.12.9 | yes | yes | yes | yes |
| aimless | update to version 0.7.6 | yes | yes | yes | yes |
| cparrot | update to version 1.0.6 | yes | yes | yes | yes |
| acorn | bug fix | yes | yes | yes | yes |
| morda | updated to version 41 | yes | yes | yes | - |
| lorestr | fixed connection to RCSB servers | yes | yes | yes | yes |
| ccp4i2 | updated to version 1.1.10 | yes | yes | yes | yes |
Update 7.1.015
Date: 22.06.21
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| shelxe | update: -O3 side chain tracing (give rootname.seq file with fasta format for each chain) | yes | yes | yes | yes |
| Recommended -t1 or -t2, -a10 or more if difficult | yes | yes | yes | yes | |
| rvapi | RVAPI histogram functions | yes | yes | yes | yes |
| gemmi | update to version 0.4.6 | yes | yes | yes | yes |
Update 7.1.016
Date: 10.09.21
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| coot | update to version 0.9.6 | yes | yes | yes | yes |
| update to version 0.9.6 | yes | yes | yes | yes | |
| ccp4cloud | updated to version 1.6.023 | yes | yes | yes | yes |
| ccp4i2 | updated to version 1.1.11 | yes | yes | yes | yes |
| phaser | minor bug fix | yes | yes | yes | yes |
| mrbump | update to 2.2.5 | yes | yes | yes | yes |
| Alphafold2 database access | yes | yes | yes | yes | |
| privateer | update to MKIV | yes | yes | yes | yes |
| rabdam | update to version 1.6.3 | yes | yes | yes | yes |
| monomers | update to riding hydrogen positions | yes | yes | yes | yes |
| morda | updated to version 42 | yes | yes | yes | - |
Update 7.1.017
Date: 11.11.21
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| ccp4cloud | update to version 1.6.024 | yes | yes | yes | yes |
| pointless | version 1.12.12; includes a bug fix when combining files with different point groups | yes | yes | yes | yes |
| mosflm | iMosflm version 7.4.0 | yes | yes | yes | yes |
| buccaneer | version 1.6.11 | yes | yes | yes | yes |
| nautilus | version 0.5.4 | yes | yes | yes | yes |
| gemmi | update to version 0.4.9 | yes | yes | yes | yes |
| mrparse | update to version 0.2.4; includes EBI-AFDB search | yes | yes | yes | yes |
| ccp4mg | updated to pull models from EBI-AFDB | yes | yes | yes | yes |
| mrbump | version 2.2.6; updated EBI-AFDB options | yes | yes | yes | yes |
| rabdam | version 1.6.4; fixes bugs | yes | yes | yes | yes |
| ccp4i2 | version 1.1.12; updates and bug fixes | yes | yes | yes | yes |
| morda | updated to version 44 | yes | yes | yes | - |
Update 7.1.018
Date: 29.11.21
| Component | Description | Mac OS 64-bit | Linux 64-bit | Linux AMD 64-bit (legacy) | Windows 64-bit |
|---|---|---|---|---|---|
| ccp4cloud | updated to version 1.7.001 | yes | yes | yes | yes |