CCP4 7.0 Updates

Update packages

The tarballs linked to this page are for use with CCP4 updater (ccp4um) in off-line mode (e.g. without network connection). You do not need them if your CCP4 update works normally through the internet.

Follow instructions below if you do intend to use the CCP4 updater in off-line mode.

Linux, Mac OS X

1. Download and uncompress the appropriate update directory:

2. Start Update Manager from the command line as follows:

ccp4um -uri full-path-to-update-directory

Windows

1. Download and uncompress the appropriate update directory:

2. Double-click on CCP4-Console icon on the Desktop
3. Start Update Manager from CCP4-Console as in Example below.

* Example

The full path to downloaded and unzipped update directory:
C:\Users\Andrey\Downloads\ccp4-7.0-updates-win64
The command to run in CCP4-Console (note that URI contains slashes, not backslashes):
ccp4um -uri file:///C:/Users/Andrey/Downloads/ccp4-7.0-updates-win64

* An issue with double occurrence of ccp4-7.0-updates-win64 in the folder path.

There are several ways of performing step (1). One of them is to download the zip-archive, right mouse click on the archive icon and select Extract All... from the menu. The Extract window opens with the default destination path ending with ccp4-7.0-updates-win64. With such a default, the path to update folder will have two occurrences of ccp4-7.0-updates-win64 in it, for example:
C:\Users\Andrey\Downloads\ccp4-7.0-updates-win64\ccp4-7.0-updates-win64
Correct URI in (3) accordingly in such a case or move the internal folder to a more convenient location.

Known issues with Update Manager


No 5
Fixed -
Introduced 7.0.053 (16.03.18)
Symptoms Interface shows message Checking for new updates and does not activate the Manage Updates button
Affected interfaces CCP4i
Affected platforms Mac OS X (and others?)
Additional conditions -
What to do Start Update Manager from CCP4i2 or from the command line (as in No 4)

No 4
Fixed 7.0.053 (19.03.18)
Introduced 7.0.053 (16.03.18)
Symptoms Update Manager window does not open
Affected interfaces CCP4i2, CCP4i
Affected platforms Linux, Mac OS X
Additional conditions CCP4 is installed "for all users" (Update Manager asks for admin password)
Update 53 installed before Sunday 18th of March 22:30 GMT
What to do 1. Open Terminal window
2. Type in
sudo -E ccp4um
3. In the Update Manager window: "Next"; uncheck the check box next to 7.0.053; "Apply"
4. Repeat (2) and apply new updates (including the repaired version of update 53)

* Update Manager does not start at step (2) means CCP4 environment variables are not set in the Terminal shell. In this case, specify full path to ccp4um:

sudo path_to_ccp4_installation_dir/ccp4-7.0/bin/ccp4um

No 3
Fixed 7.0.053 (16.03.18)
Introduced 7.0.052 (28.02.18)
Symptoms Update Manager window does not open
Affected interfaces CCP4i2
Affected platforms Windows
Additional conditions -
What to do 1. Double-click on CCP4-Console icon on the Desktop
2. Type in
ccp4um
3. Apply new updates

No 2.2
Fixed -
Introduced Windows feature
Symptoms Error dialog:

Update encountered the following error:
Cannot open file: ...
and cannot continue normally

Affected interfaces CCP4i2, CCP4i, command line
Affected platforms Windows
Additional conditions There are running CCP4 jobs
What to do 1. Wait for all jobs to finish
2. Start Update Manager
3. In the Update Manager window: "Next"; uncheck the check box next to the last applied update; "Apply"; "Finish"
4. Start Update Manager again and apply new updates

* In some cases files remain locked even when job has finished and you may need to restart your computer.

See also No 2.1 below


No 2.1
Fixed 7.0.053 (16.03.18)
Introduced 7.0.000 (07.01.16)
Symptoms Error dialog:

Update encountered the following error:
Cannot open file: ...
and cannot continue normally

Affected interfaces CCP4i2
Affected platforms Windows
Additional conditions No CCP4 programs are currently running
What to do 1. Quit CCP4i2
2. Start Update Manager from CCP4i or from CCP4-Console (as in No 3)
3. In the Update Manager window: "Next"; uncheck the check box next to the last applied update; "Apply"; "Finish"
4. Start Update Manager again and apply new updates

See also No 2.2 above


No 1.2
Fixed 7.0.053 (16.03.18)
Introduced 7.0.049 (15.01.18)
Symptoms Postinstall scripts fail with the following error message
QObject::connect: Cannot connect MonitoredProcess::lines(const QString) to (null)::append(const QString)
Affected interfaces command line
Affected platforms Linux, Mac OS X, Windows
Additional conditions -
What to do Apply new updates

No 1.1
Fixed 7.0.049 (15.01.18)
Introduced 7.0.000 (07.01.16)
Symptoms Postinstall scripts occasionally fail with timeout message
Affected interfaces CCP4i2, CCP4i
Affected platforms Linux, Mac OS X, Windows
Additional conditions -
What to do Restart Update Manager and continue applying new updates.

The best option for Windows is to apply new updates form CCP4-Console (as in No 3 above) or to reinstall CCP4


Updates summary

Update ID: 7.0.001
Date: 25.01.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
acedrgupdated tables and executableyesyesyes--
balbes-pipelineadded-yesyes--
ccp4ichanges associated with changes in ccp4um and crank2yesyesyes--
ccp4i2fixes for importing projectsyesyesyes--
refmac task: bond order added to ligands reportyesyesyes--
fix stopping unnecessary reading of MTZ fileyesyesyes--
fix type P2 21 21yesyesyes--
temporary fix to aimless_pipe FreeR testyesyesyes--
fix stopping possible crash on exit;yesyesyes--
fix for coping with data in external filesyesyesyes--
added 'Quick Expert' and Youtube links to Help menuyesyesyes--
Please pick up update 4588 from ccp4i2 trunk.yesyesyes--
buccaneer pipeline: BFAC restraints reverted to refmac defaultsyesyesyes--
fixed sporadic failures to reopen New project windowyesyesyes--
changes associated with changes in ccp4umyesyesyes--
ccp4mgfix for using Gesamt in superpose taskyesyesyes--
crank2added scaleit; other fixesyesyesyes--
dialsfixed dials.reciprocal_lattice_vieweryesyesyes--
monomersadded 1774 entries generated with acedrgyesyesyes--
curated several entriesyesyesyes--
mrbumpupdated database for PDB sequencesyesyesyes--
qt4Added missing QtDBus library required for some platforms-yesyes--

Update ID: 7.0.002
Date: 02.02.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
MolrepBug: fixed integration radius dependence on unit cellyesyesyes--
prosmartBug: bug fixesyesyesyes--
ampleBug: Bug fixesyesyesyes--
acedrgBug: Bug fixesyesyesyes--
clipperBug: remove unnecessary file readsyesyesyes--
updaterBug: Bug fixesyesyesyes--
ccp4i2Bug: validate geometry - fix for issue with multiple conformationsyesyesyes--
Bug: ccp4mg launch - fix for issue on windowsyesyesyes--
Bug: crank2 output fixesyesyesyes--

Update ID: 7.0.003
Date: 11.02.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4i2fixed update dialog window launching every time a new project window opensyesyesyes--
setupfixed update manager for windows 64-bit accessing incorrect directory on serveryesyesyesyesyes

Update ID: 7.0.004
Date: 26.02.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
documentationupdate: update to privateer documentationyesyesyesyesyes
ccp4i2privateer interface - fixed a bug with three letter codes not being passed to Privateeryesyesyesyesyes
bug - fix for overly aggressive update messagesyesyesyes--
viewhklupdate 0.0.2 - reflectionlist updates and set intensity for unmerged filesyesyesyesyesyes
ccp4iupdate: phaser interfaces updateyesyesyesyesyes
phaserbug fixesyesyesyesyesyes
cootfix mixed libpng statusyes----
aimlessnew version 0.5.23yesyesyesyesyes
ccp4mgfixes problems with NMR models in MrBUMP interfaceyesyesyesyesyes
fixes batch rendering when CCP4 is on different drive from output file---yesyes
pointlessXML fixesyesyesyesyesyes
monomersadded and corrected several monomersyesyesyesyesyes
removed duplicated monomer COM to fix JLigandyesyesyesyesyes
mrbumpupdated for running in CCP4i2 on Windowsyesyesyesyesyes

Update ID: 7.0.005
Date: 08.03.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4ifixed communication with WinCoot---yesyes

Update ID: 7.0.006
Date: 18.03.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ctruncateupdate to 1.17.9yesyesyesyesyes
blendupdate to 0.6.19yesyesyesyesyes
clipper-pythonconflict between matrixRow class from ccp4mg and clipper-pythonyesyesyesyesyes
documentationfreerflag documentation updateyesyesyesyesyes
pisaupdateyesyesyesyesyes
xia2include missing xia2_pychef_ext.soyesyesyesyesyes
xia2 bug fixyesyesyesyesyes
crank2bug fixesyesyesyesyesyes
ccp4i2display database icon on dictionary selection widget in Coot taskyesyesyesyesyes
Fix locale issues in linux startup scriptsyesyesyesyesyes
Better display of the Input tab for seelcted sub-jobsyesyesyesyesyes
Remove View/Edit from Dictionary file menuyesyesyesyesyes
Fix 'View in CCP4mg' for Refmac tasksyesyesyesyesyes
ccp4i2 imosflm interface: pass job directory to imosflm so output goes in correct locationyesyesyesyesyes
Fixes failure to run on some SUSE linux and forces "C" locale to avoid internationalization problemsyesyesyesyesyes
mmdb2MMDB updateyesyesyesyesyes
viewhklupdateyesyesyesyesyes
qtlibsupdateyesyesyesyesyes
choochpreviously missing---yesyes

Update ID: 7.0.007
Date: 24.03.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsupdate to release 1.1yesyesyesyesyes
cctbxupdate to 17 March 2016 versionyesyesyes--

Update ID: 7.0.008
Date: 05.04.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
monomersChirality fix in 5UJ, PMR; format fix B1Z; added 47K, 5TW, 5UOyesyesyesyesyes
clipper-python}Fixes matrix element accessyesyesyes--
Xia2Update to release 0.3.6.3 (fixes ctruncate issue)---yesyes
pointlessupdate to 1.10.21yesyesyesyesyes
trap non-overlap between data and referenceyesyesyesyesyes
improved resolution limit robustnessyesyesyesyesyes
aimlessupdate to 0.5.24yesyesyesyesyes
fix bug if different resolutions for different runs. Small bug fix in secondary beam scaling. Switch off secondary scaling in first pass, stabilises the scaling in some cases. Trap negative scales (shouldn't happen). Fixes to sample SDs (for high multiplicity), compare sample SD to propagated SD. Output secondary beam corrections to logfile and XML. Reset SdFac after first round scalingyesyesyesyesyes
pisaGeneration of complete remarks 300 and 350yesyesyesyesyes
ccp4i2Make modern style the defaultyesyesyesyesyes
Fix for FreeR flag generation when one already existsyesyesyesyesyes
Fix import merged performing aimless analysis on intensities when user has selected Fsyesyesyesyesyes
ccp4ilocate clustalw2 for alignment taskyesyesyesyesyes

Update ID: 7.0.009
Date: 06.04.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
cootupdate to version 0.8.3yesyesyes--

Update ID: 7.0.010
Date: 11.04.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
blendupdate to 0.6.20yesyesyesyesyes
Fixed annoying halting of the program in endless loop when asking for dendrogram-type graphics (graphics mode). Now the deepest possible level is always selected even when the user chooses an higher level. Output in "graphics" directory has also level index limited to deepest level, no matter what user decides.yesyesyesyesyes
Increased formatting space for I and sigI in "refs_*_*.dat" files.yesyesyesyesyes
acedrgupdated internal tables for bonds and anglesyesyesyesyesyes
the version working under Windows systemyesyesyesyesyes
Xia2(experimental) turn off multiprocessing---yesyes
aimless0.5.25 undoes nasty introduced in 0.5.24yesyesyesyesyes
documentationupdate pointless, aimless and dimple documentationyesyesyesyesyes
cootcorrect for renaming of findwaters and findligand binaries, and relocation of mini-rsryesyesyes--

Update ID: 7.0.011
Date: 27.04.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4i2major updateyesyesyesyesyes
dialsupdate to 1.1.3yesyesyesyesyes
libccp4add P 1 21/n 1 to symop.libyesyesyesyesyes
arcimboldoextended options in ccp4i interfaceyesyesyes--
connection to remote gridyesyesyes--
molrepminor update aimed at EMyesyesyesyesyes
sfcheckfix for reading of EM mapsyesyesyesyesyes

Update ID: 7.0.012
Date: 06.05.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
refmacFc(anom) is now calculated if ANOM MAPO is usedyesyesyesyesyes
pointlessupdate to 1.10.25yesyesyesyesyes
More robust alternative indexing checks to previous fileyesyesyesyesyes
Allow combination of multiple merged files into an unmerged fileyesyesyesyesyes
Added extra optional headers to free-format input filesyesyesyesyesyes
jsrviewimproved efficiency for jobs with many calls to rvapiyesyesyesyesyes
ctruncate1.17.14: update anomalous warningsyesyesyesyesyes
libgbug fixesyesyesyesyesyes
ccp4i2updated import_mergedyesyesyesyesyes
libccp4something for Harryyesyesyesyesyes

Update ID: 7.0.013
Date: 17.05.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsDIALS 1.2.0yesyesyesyesyes
Support for EIGER datayesyesyesyesyes
Outlier rejection for centroid refinement now in blocksyesyesyesyesyes
dials.discover_better_experimental_model now uses random subset of reflections from entire scanyesyesyesyesyes
xia2xia2 0.4.0.335yesyesyesyesyes
Support for EIGER data in -dials and -3d pipelines (latter requires H5ToXDS)yesyesyesyesyes
xia2.html report automatically generated after successful completion of xia2yesyesyesyesyes
DIALS pipeline now includes DIALS beam centre searchyesyesyesyesyes
xia2.to_shelx can use output of xia2.get_unit_cell_errors and generate cif fileyesyesyesyesyes

Update ID: 7.0.014
Date: 24.05.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ARP/wARPUpdate for operation with new refmacyesyesyes--
refmacscaling and many other bugs were removed to to make sure that arp/warp works without problemyesyesyesyesyes
Multiple sharpeinging/blurring options have been added. These are for EM maps as well as crystallographic mapsyesyesyesyesyes
Many features have been addedyesyesyesyesyes
ccp4i2fixes for coot interfaceyesyesyesyesyes
aimless0.5.26, speed up of SF calculationyesyesyesyesyes
cootreading of anomalous mapsyesyesyesyesyes
monomersChirality fix in RG1; multiple fixes for ASX, GLX; format fix in 0KA; replaced 51P; added 46W, 4B7, K3G, VVA, XP5yesyesyesyesyes
gesamt1.13: detail CSV reports, inclusion/exclusion lists and trim options for pdb scansyesyesyesyesyes
documentationupdate for aimless and pointlessyesyesyesyesyes
ccifupdate of mmcif dictionary to 4.064 (3/5/16)yesyesyesyesyes

Update ID: 7.0.015
Date: 17.06.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4mgUpdated MrBUMP interfaceyesyesyesyesyes
N-/O-glycosylation selection menusyesyesyesyesyes
New glycan vieweryesyesyesyesyes
privateerN- and O- glycan structure validationyesyesyesyesyes
reworked stereochemistry detectionyesyesyesyesyes
generates SVG diagrams of glycansyesyesyesyesyes
many bug fixesyesyesyesyesyes
ccp4i2new privateer interfaceyesyesyesyesyes
mrbumpupdates to include better scoring and ensemblingyesyesyesyesyes
ampleNew modularised version of AMPLEyesyesyesyesyes
pointless1.10.27: accurate averaging of wavelengthyesyesyesyesyes
aimless0.5.27: accurate averaging of wavelengthyesyesyesyesyes
ccp4iupdate ample interfaceyesyesyesyesyes
gesamtupdate to domain identificationyesyesyesyesyes

Update ID: 7.0.016
Date: 24.06.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
refmac5bug fixesyesyesyesyesyes
monomersmore monomers and correctionsyesyesyesyesyes
ccp4i2update buccaneer pipeline and add shelxeMRyesyesyesyesyes
buccaneerupdate to 1.6.3yesyesyesyesyes
molrepaniso correction improvementyesyesyesyesyes
sfcheckaniso correction improvementyesyesyesyesyes
blendupdate to 0.6.21yesyesyesyesyes
ViewHKLdeal with names including slashesyesyesyesyesyes
dimpleadjust parsing of pointless output for changes in pointless 1.10.22yesyesyesyesyes
documentationupdate blend documentationyesyesyesyesyes
ARP/wARPUpdate for operation with new refmacyesyesyes--

Update ID: 7.0.017
Date: 07.07.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
arcimboldofix for space group C121yesyesyes--
ccp4-progsfreerflag: fix forunit cell parameters inconsistent with the space groupyesyesyesyesyes
lorestradded Windows support---yesyes
introduced parallelisation and corresponding changes made in ccp4iyesyesyesyesyes
jsrviewfixed widget removalyesyesyesyesyes
fixed dynamic display of several files in separate tabsyesyesyesyesyes
option of putting report page as divyesyesyesyesyes
dialsfixed export_bitmapsyesyesyesyesyes

Update ID: 7.0.018
Date: 12.08.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4i2improved menu and task responsivenessyesyesyesyesyes
fixes to SIRAS pipelineyesyesyesyesyes
remote job submissionyesyesyesyesyes
shelxe1. MRSAD (when shelxe reads name.pda and name_fa.hkl) was not working correctly. This was reported by Thomas Schneider.yesyesyesyesyes
2. There was an error in calculating the phase errors relative to a reference structure that was specific to the not very common space group F23, reported by Jens Thomas.yesyesyesyesyes
cootcoot 0.8.5yesyesyes--

Update ID: 7.0.019
Date: 06.09.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsupdate to 1.3yesyesyesyesyes
xia2update to 0.5yesyesyesyesyes
ccp4i2update for xia2 changesyesyesyesyesyes
cootlibpng issue correctionyes----

Update ID: 7.0.020
Date: 22.09.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
pisaupdate to version 2.0.9yesyesyesyesyes
crystal data is now written in output structure filesyesyesyesyesyes
ccp4i2optional use of native file browser and separate Download buttonyesyesyesyesyes
arcimboldofixed check for shelx versionyesyesyes--
pointlessupdate to 0.5.28yesyesyesyesyes
prosmartupdate to 0.853yesyesyesyesyes
Added additional support for nucleic acidsyesyesyesyesyes
cootupdate to 0.8.6yesyesyes--
correction to pyrogen python callyesyesyes--
ARP/wARPinstallation script is rerun in conjunction with CCP4 update 16yesyesyes--

Update ID: 7.0.021
Date: 14.10.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
panddaNew application: a multi-dataset electron density analysis approach to changed-state (e.g. bound ligand) identificationyesyesyes--
aimless0.5.28 format change to RunPairs to avoid coalescence of columnsyesyesyesyesyes
ccp4i2Improvements to remote running and enable customised remote runningyesyesyesyesyes
Add 'Show jobs and processes' option to the Utilities menuyesyesyesyesyes
Add option to copy job parameters into a task.yesyesyesyesyes
More automatic cleanup of temporary files on closing down CCP4i2yesyesyesyesyes
Fix 'Project manager' issue that allowed a project to be its own parent (and disappear)yesyesyesyesyes
ccp4isuperpose-gesamt: corrected previously mixed fixed and moving moleculesyesyesyesyesyes
clipper-pythonfixes for ccp4i2yesyesyesyesyes
documentationdocumentation for panddayesyesyes-yes
update of blend documentationyesyesyesyesyes
pythonInclusion of standalone python for i2 to fix issues with links and crashes---yes-

Update ID: 7.0.022
Date: 18.11.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
shelxlupdateyesyesyesyesyes
phaserupdate to 2.7.17yesyesyesyesyes
xia2update to 0.5.57yesyesyesyesyes
dialsupdate to 1.3.5yesyesyesyesyes
cctbxupdateyesyesyesyesyes
arcimboldoUpdate for new phaseryesyesyesyesyes
updated ccp4i task interface for lite and added interfaces for borges and schredderyesyesyesyesyes
fixes for borges libraryyesyesyesyesyes
ccp4iUpdated phaser interfacesyesyesyesyesyes
bug fix: update manager on windows 10yesyesyesyesyes
ccp4i2update for new phaseryesyesyesyesyes
bug fix: added opt out for updatesyesyesyesyesyes
aimlessupdate to 0.5.29yesyesyesyesyes
pointlessupdate to 1.10.27yesyesyesyesyes

Update ID: 7.0.023
Date: 23.11.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
cootupdate to coot 0.8.7yesyesyes--
phaserBug fixes: ccp4i and interaction with Arcimboldoyesyesyesyesyes
Update: Improved treatment of systematically weak data (e.g. severe anisotropy)yesyesyesyesyes
ccp4ibug fix: phaser, updated defaults for phaser tasksyesyesyesyesyes
bug fix: mrbump, updated defaults for phaseryesyesyesyesyes
numpynumpy update for ccp4i2 python---yes-

Update ID: 7.0.024
Date: 26.11.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
cootfix: fix to coot auto-mutateyesyesyes--
pointless1.10.28 trap Nan in centrosymmetric probability (small molecule non-chiral)yesyesyesyesyes
crank2update: 2.0.132yesyesyesyesyes
refmacRefmac would confuse atoms names when a link between the same monomer names was defined.yesyesyesyesyes
monomersvarious updatesyesyesyesyesyes
blendupdate: blend version 0.6.22yesyesyesyesyes
ccp4i2update:updated crank2 pipeline 2.0.132yesyesyesyesyes
update:gesamt single chain alignmentyesyesyesyesyes
ccp4iupdate: updated crank2 interface 2.0.132yesyesyesyesyes

Update ID: 7.0.025
Date: 07.12.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
MrBUMPGesamt-aligned ensembling addedyesyesyesyesyes
Bug fixesyesyesyesyesyes
dialsFixed configuration to repair xia2 and dials.image_vieweryesyesyes--
sfcheckFixed postscript outputyesyesyesyesyes
CCP4mgUpdate for MrBUMP model preparation supportyesyesyesyesyes
ccp4iUpdates to MrBUMP interfaceyesyesyesyesyes

Update ID: 7.0.026
Date: 15.12.16

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
cootFix for auto-mutation errors (again)yesyesyes--
Turn off ccp4srs, fixes crash in coot-mini-rsryesyesyes--

Update ID: 7.0.027
Date: 06.01.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
shelxeupdate expiry dateyesyesyesyesyes
prosmartupdate to 0.855yesyesyesyesyes
added ability to generate restraints involving alternative conformationsyesyesyesyesyes
aimlessupdate to 0.5.31yesyesyesyesyes
restrict Emax test to resolutions with a valid normalisationyesyesyesyesyes
monomersadditions and correctionsyesyesyesyesyes
lorestrBug fixesyesyesyesyesyes
ctruncateupdate to 1.17.20yesyesyesyesyes
corrections to text on ice-ringsyesyesyesyesyes
improve stability when dataset name is incorrectyesyesyesyesyes
cif2mtzBug fixesyesyesyesyesyes
spickerNew versionyesyesyesyesyes
privateerfixes dirty CIF bugyesyesyesyesyes
introduces oxford angles into the SVG glycan diagramyesyesyesyesyes
introduced support for xylobioseyesyesyesyesyes
ccp4i2interface tidy and updateyesyesyesyesyes
arcimboldoupdates and bug fixesyesyesyes--

Update ID: 7.0.028
Date: 26.01.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
DIALSupdate to 1.4.2yesyesyesyesyes
XIA2update for DIALS 1.4.2yesyesyesyesyes
ccp4iupdate to xia2 interfaceyesyesyesyesyes
ccp4i2update to xia2 interfaceyesyesyesyesyes
Fix bug preventing display of Merge MTZs taskyesyesyesyesyes
ccp4-progsgensym: fix SPHERE optionyesyesyesyesyes

Update ID: 7.0.029
Date: 10.02.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
pointlessupdate to 1.10.29yesyesyesyesyes
Do not use alternative reindex operators which will fail cell tolerance test later. Make the just-reindex C2-}I2 conversion more robust.yesyesyesyesyes
pisaFixed an essential bug in the calculation of disulphide bondyesyesyesyesyes
dimplecheck the mtz unit cell against a list of known contaminantsyesyesyesyesyes
bug fixesyesyesyesyesyes
acedrgMany updates including internal tables and algorithmsyesyesyesyesyes
ccp4mgFix bug in Mg/MrBUMP whereby no atoms are shown. This is to cope with changes in multi-domain MrBUMP.yesyesyesyesyes

Update ID: 7.0.030
Date: 16.02.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
DIALSDIALS 1.4.4 (2017-02-09):yesyesyesyesyes
dials.export format=jsonyesyesyesyesyes
fix labels and ranges in dials.report plotsyesyesyesyesyes
xia2xia2 0.5.179:yesyesyesyesyes
fix incorrect anomalous completeness statisticsyesyesyesyesyes
bug fix for pipeline=dials scaler=xdsa combinationyesyesyesyesyes
putative bug fix for resetting refiners when combined with multi-sweep indexingyesyesyesyesyes
fix for integrate_p1=True reintegrate_correct_lattice=False when lattices are eliminatedyesyesyesyesyes

Update ID: 7.0.031
Date: 22.02.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4i2Fixing phaser_MR_AUTO compatability with new phaser, which otherwise raised pickling issuesyesyesyesyesyes
DR pipeline, add Wilson plot to top level graphsyesyesyesyesyes
acedrgFixed bugs on the cif parser to deal with special characters etc.yesyesyesyesyes
arcimboldoCorrections on BORGES and new features in SHREDDERyesyesyes--

Update ID: 7.0.032
Date: 06.03.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ampleUse of contact predictionyesyesyesyesyes
ccp4iUpdates to ample interfaceyesyesyesyesyes
conkitNew component for contact predictionyesyesyesyesyes
acedrgadd a parameter at call RDKit "addHs" functionyesyesyesyesyes
New feature: Comparison of RDKit UFF forcefield and REFMAC Energyyesyesyesyesyes
Bug fix: Cic parser : a new line break added.yesyesyesyesyes
New feature: Using RDKit UFF energy to select initial conformers of top scores to do geometric optimization by REFMACyesyesyesyesyes
New features: Allow users to request (1) number of initial conformers for acedrg to try. option -j (2) number of RDKit optimization steps option -lyesyesyesyesyes
ctruncateupdate to 1.17.22yesyesyesyesyes
moderate bad rings reportyesyesyesyesyes
protect Rstandard against negative valuesyesyesyesyesyes
use completeness variation in bad ringsyesyesyesyesyes
output percentage of bad ringsyesyesyesyesyes
downweight low resolution in bad ringsyesyesyesyesyes
ccp4i2ctruncate task: moderate bad rings reportyesyesyesyesyes

Update ID: 7.0.033
Date: 17.03.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
cootRelease 0.8.8yesyesyes--
Release 0.8.8 available as separate download from www.ccp4.ac.uk---yesyes
boostadd serialization moduleyesyesyesyesyes

Update ID: 7.0.034
Date: 28.03.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsupdate to 1.4.5yesyesyesyesyes

Update ID: 7.0.035
Date: 05.04.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4i2Fixed Angstrom characters in DR pipelineyesyesyesyesyes
lorestrFeature - twin test not performed if Rfree}43%, Feature - saving twin, solvent, etc to the protocol fileyesyesyesyesyes
ccp4srs-pythonCCP4SRS Python bindings can use mmdb Graph matchingyesyesyesyesyes
monomersAdded 1RZ, 61Q, 6NO, 6O1, 73M, 79E, 7E3, 7EE, 7JY, 7KL, D9P, KZH, OB9, ZS8yesyesyesyesyes
Atom name fixes in ERI, PHWyesyesyesyesyes
Replaced ALSyesyesyesyesyes
ccp4mgUpdate to CCP4MG/MrBUMP interface to allow viewing multiple domains. Also adds a 1D visualization of the domains.yesyesyesyesyes

Update ID: 7.0.036
Date: 11.04.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
mmdb2Fixed a bug in handling chains with numeric Idyesyesyesyesyes
pointless1.11.1, make reindex/spacegroup options for merged data more robust to illicit transformationsyesyesyesyesyes
add extra data to XML for ccp4i2yesyesyesyesyes
aimless0.5.32 some improved error reporting to XML.yesyesyesyesyes
Added calculation of ISa, asymptotic I/sigIyesyesyesyesyes
ctruncate1.17.24 reduce warnings and work with negative mean Intensityyesyesyesyesyes
pisaText output of interaction radar values addedyesyesyesyesyes

Update ID: 7.0.037
Date: 05.05.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsUpdate to 1.5.1yesyesyesyesyes
xia2Update to 0.5.277yesyesyesyesyes

Update ID: 7.0.038
Date: 08.05.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsmissing files--yes--
tidy of files---yesyes
ccp4i2updated mdm2 demo datayesyesyesyesyes

Update ID: 7.0.039
Date: 23.05.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
crank2update to 2.0.146yesyesyesyesyes
new heavy atom location code prasayesyesyesyesyes
sfcheckcell format correction in cifile from mtzyesyesyesyesyes
ccp4i2fix for lidia on linux-yesyes--
fix the MG picture is not drawn in the reportsyesyesyesyesyes
updates form new crank2yesyesyesyesyes
monomersadded 1N7, 2YR, 68O, 7EC, 8TS, HGD, OEY (poor), QUJyesyesyesyesyes
ccp4mgfixes a minor issue drawing S-N bonds.yesyesyesyesyes
ccp4-progsrwcontents: accurate calculation of molecular weightyesyesyesyesyes
acorn: increase tolerance to CELLCHK routineyesyesyesyesyes

Update ID: 7.0.040
Date: 06.06.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
Molrepbug fixes and improved EM map readingyesyesyesyesyes
packing improvementyesyesyesyesyes
sfcheckbug fixes and improved EM map readingyesyesyesyesyes
ctruncate1.17.25, improve stability of Norm calculationyesyesyesyesyes
clipperadditional none standard spacegroup settingsyesyesyesyesyes
mmdb2fixed a bug in function for forced element name correction, causing a major fault in SSMyesyesyesyesyes
superposeSSM update due to the corresponding bug fixes in MMDByesyesyesyesyes
ccp4mgupdate to mrbump sequence allignmentyesyesyesyesyes

Update ID: 7.0.041
Date: 19.06.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
rdkitupdate to 2017_03_2yesyesyesyesyes
acedrgupdate for rdkit, bug fixes and updatesyesyesyesyesyes
ccp4i2update for new acedrgyesyesyesyesyes
ccp4mgrecompile for new rdkityesyesyesyesyes
cootrecompile for new rdkityesyesyes--

Update ID: 7.0.042
Date: 28.06.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsDIALS 1.6.0 (2017-06-02):yesyesyesyesyes
dials/xia2: dynamic masking of diamond anvil cells for DLS I19-2 high pressure experiments JMP improvements to mosaic spread estimate (#342, #119)yesyesyesyesyes
DIALS 1.6.1 (2017-06-16):yesyesyesyesyes
dials.image_viewer: respect kernel_size parameter (#354)yesyesyesyesyes
Rayonix TIFF format fixes (#370)yesyesyesyesyes
DIALS 1.6.2 (2017-06-20):yesyesyesyesyes
cctbx algorithmic stability fixes (cctbx/cctbx_project#43)yesyesyesyesyes
dials.export_mtz: improved error messages (#357)yesyesyesyesyes
xia2xia2 0.5.319 (2017-06-02):yesyesyesyesyes
new xia2.htmlyesyesyesyesyes
xia2 fixed for I23 data with distance != 0; xia2/xia2#124 and friendsyesyesyesyesyes
xia2 0.5.325 (2017-06-14):yesyesyesyesyes
XDS compatibility fixes (xia2/xia2#131)yesyesyesyesyes
Trap non-fatal fatal error (xia2/xia2#115)yesyesyesyesyes
respect batch_range parameter in resolution determinationyesyesyesyesyes
silence xtriage outputyesyesyesyesyes
xia2 0.5.328 (2017-06-20):yesyesyesyesyes
Generate .p4p files in small molecule mode (xia2/xia2#134)yesyesyesyesyes
ccp4i2updates for new xia2 and dialsyesyesyesyesyes

Update ID: 7.0.043
Date: 24.07.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
pointless1.11.3 for XDS files, make batch headers within run even if there are no observationsyesyesyesyesyes
1.11.2 Honour explicit run specification when there is a reference fileyesyesyesyesyes
ccp4iupdate to acedrg scriptyesyesyesyesyes
acedrgMore algorithms added for valence checking and add/delete atomsyesyesyesyesyes
lorestrFixed error in pdb download after RSCB PDB introduced SSL verificationyesyesyesyesyes
molrepPhased Rotation Function improvementyesyesyesyesyes
ccp4mgFixes the svg method of phmmerReport.py to not use any code which requires a QApplication rather than QCoreApplicationyesyesyesyesyes
cbuccaneer1.6.4 fixes a divide by zero erroryesyesyesyesyes
dialsDIALS 1.6.3 includes xia2 0.5.337 (2017-07-03):yesyesyesyesyes
Many dials.export fixes, including exports from single images (#388)yesyesyesyesyes
xia2: Make d_min= command line parameter work again (xia2/xia2#136)yesyesyesyesyes
xia2: Avoid crash when running xtriage on centric data (xia2/xia2#139)yesyesyesyesyes
xia2: Move extra multiplicity files away from main directory (xia2/xia2#140)yesyesyesyesyes
xia2: Remove '.bat' from output file names when run on Windowsyesyesyesyesyes
xia2: Improvements in HTML report (xia2/xia2#133, xia2/xia2#141)yesyesyesyesyes
xia2: xia2.strategy fixesyesyesyesyesyes

Update ID: 7.0.044
Date: 10.08.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
arcimboldolite: added coiled coil modeyesyesyes--
ccp4ifixed switching between hklin files with F and Iyesyesyesyesyes
ccp4-progsPDBCUR to updateyesyesyesyesyes
crank2enantiomorphic spacegroup issueyesyesyesyesyes
libgsemi-automated search modes addedyesyesyesyesyes
lorestrCCP4i2 compatibility addedyesyesyesyesyes
mmdb2MMDB2 to updateyesyesyesyesyes
molrepSAPTF improvementyesyesyesyesyes

Update ID: 7.0.045
Date: 04.10.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
cootcorrectsions to some typosyesyesyes--
shelxeupdate to 2017_1yes-yesyesyes
improved chain tracing at lower than 2A resolutionyes-yesyesyes
further details at http://shelx.uni-ac.gwdg.de/SHELX/changes.phpyes-yesyesyes
Molrepfix for bug in map readyesyesyesyesyes
sfcheckremoved bug in reading ccp4 mapyesyesyesyesyes
pointless1.11.4 increase number of images from Scalepack fileyesyesyesyesyes
lorestrfixed CCP4i2 compatibility issue with -p2 file namesyesyesyesyesyes
ctruncatebug fixes, protect 0 value diagonal elements in hessianyesyesyesyesyes
hklfilebug fixesyesyesyesyesyes
acedrgbug fixesyesyesyesyesyes
ccp4i2new nautilus interfaceyesyesyesyesyes
lorestr: fixed difference map importyesyesyesyesyes
crank2: fixes for specific space groupsyesyesyesyesyes
arpwarp: added output xyz with dummy atoms removedyesyesyesyesyes
added task interface for morda-mpyesyesyesyesyes
ccp4ijsrview set as the default viewer for crank2yesyesyesyesyes
fixed termination of subprocessesyesyesyesyesyes
morda-mpreleased python wrapper and i1 interfaceyesyesyesyesyes
crank2disabling ccp4i jsrview pop-upyesyesyesyesyes
prasa fine-tuningyesyesyesyesyes
fixes for specific space groupsyesyesyesyesyes
fixed flip-mem variant of charge flippingyesyesyesyesyes

Update ID: 7.0.046
Date: 13.11.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsdilas 1.7.2yesyesyesyesyes
xia2 0.5.436yesyesyesyesyes
acedrgbug fixesyesyesyesyesyes
refmac5bug fixesyesyesyesyesyes
simbadcontaminant searchyesyesyesyesyes
new sequence-free MR pipelineyesyesyesyesyes
ccp4iNew: simbad intefaceyesyesyesyesyes
updated aimless interfaceyesyesyesyesyes

Update ID: 7.0.047
Date: 04.12.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
panddasupdate to 2.11yesyesyes--
MolrepPFMOD correctionyesyesyesyesyes
pointless1.11.6yesyesyesyesyes
1.11.5 bug fix for multi lattice datayesyesyesyesyes
ccp4i2fixes in molrep interfaceyesyesyesyesyes
edstatsnew versionyesyesyesyesyes
ccp4ilorestr: fix for interfaceyesyesyesyesyes
monomersadd 0WD,2Q5,6G6,6ZL,79F,7K9,8LL,9Q8,FJI,OMZ,QUJ,QVE,RU2,YY9yesyesyesyesyes
Format fix: CPN,CPO,DEF,GCR,IMF,QPTyesyesyesyesyes
Replace: UAPyesyesyesyesyes
ccp4mgfixes bug which causes MG/MrBUMP to not work for many sequencesyesyesyesyesyes
update for https access to PDBeyesyesyesyesyes
mmdb2False "duplicate sequence number" error in case of short residue namesyesyesyesyesyes
numpyupdate to 1.12.1yesyesyes--
scipyupdate to 1.16.1yesyesyes--

Update ID: 7.0.048
Date: 24.12.17

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsdials 1.8.2yesyesyesyesyes
xia2 0.5.469yesyesyesyesyes
monomerscorrection of GNPyesyesyesyesyes
pointless1.11.7: fix for problem with XDS input with missing batchesyesyesyesyesyes
molrepfitting a model into EM map improvementsyesyesyesyesyes
sfcheckreading EM map correctionyesyesyesyesyes
arcimboldofix to ARCIMBOLDO_BORGESyesyesyes-yes
shelx}updated shelxeyes-yesyesyes
updated shelxlyes-yesyesyes
support ended for shelxe-yes---
pdb2ins - new input creation for shelxlyes-yes-yes

Update ID: 7.0.049
Date: 15.01.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4i2Ample interfaceyesyesyesyesyes
Simbad interfaceyesyesyes--
Added larger fonts for high res displaysyesyesyesyesyes
pointless1.11.8yesyesyesyesyes
aimless0.6.1yesyesyesyesyes
ctruncatecorrections for moments plotsyesyesyesyesyes
ample1.4.0yesyesyesyesyes
simbad0.1.8yesyesyes--
jsrviewgeneral updateyesyesyesyesyes

Update ID: 7.0.050
Date: 17.01.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
coot0.8.9yesyesyes--
aimless0.6.2yesyesyesyesyes

Update ID: 7.0.051
Date: 09.02.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
phaser2.8.2yesyesyesyesyes
ccp4iupdates for phaser 2.8yesyesyesyesyes
arcimboldoupdates for phaser 2.8yesyesyesyesyes
ampleupdate to 1.4.1yesyesyesyesyes
simbadupdate to 0.1.10yesyesyes--
dialsupdate to 1.8.4yesyesyesyesyes
ccp4iupdate for ampleyesyesyesyesyes

Update ID: 7.0.052
Date: 28.02.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4i2Numerous bug fixes, improvments to stability, speed and efficiencyyesyesyesyesyes
New: Arcimboldoyesyesyes--
New: Simbadyesyesyes--
New: Ampleyesyesyesyesyes
Enhancements to existing interfacesyesyesyesyesyes
New crystal definition and interface introducedyesyesyesyesyes

Update ID: 7.0.053
Date: 19.03.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4mgfix issues with some refmac outputyesyesyesyesyes
pointlessupdate to 1.11.10, read nXDS filesyesyesyesyesyes
buccaneerBug fixesyesyesyesyesyes
refmacBug fixes and speed enhancementsyesyesyesyesyes
crank2Bug fixes and enhancementsyesyesyesyesyes
arcimboldoBug fixesyesyesyesyesyes
molrepBug fiesyesyesyesyesyes
fragon0.1.0, MR pipelineyesyesyes--
acedrgNew features and bug fixesyesyesyesyesyes
rabdamradition damage detection, command line onlyyesyesyesyesyes
clipperbug fix in mtz writing routineyesyesyesyesyes
mordadatabase update 21yesyesyesyesyes

Update ID: 7.0.054
Date: 29.03.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
shelxebug fixesyesyesyesyesyes
correction to shelxe NCS codeyesyesyesyesyes
monomersadditional ligandsyesyesyesyesyes
simbadlattice and contaminant search---yesyes
ccp4i2new auspex interfaceyesyesyesyesyes
new simbad interface---yesyes
updated refmac interfaceyesyesyesyesyes
updated lorestr interfaceyesyesyesyesyes
updates arpwarp interfaceyesyesyes--
mosflmipmosflm 7.2.2yesyesyesyesyes
imosflm 7.2.2yesyesyesyesyes
arcimboldoupdate for new shelxeyesyesyes--
refmacfixed output coordinates in mmcif fileyesyesyesyesyes

Update ID: 7.0.055
Date: 16.04.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
coot0.8.9.1yesyesyes--
xssp3.0.0yesyesyesyesyes
rabdamBug fixesyesyesyesyesyes
srssynchronise to monomer libraryyesyesyesyesyes
ccp4i2workaround for batch file launch issues---yesyes

Update ID: 7.0.056
Date: 27.04.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
monomerscorrections for ASN etcyesyesyesyesyes
duiNew interface for DIALSyesyesyesyesyes
cctbxUpdate to 2018 Januaryyesyesyesyesyes
phaserUpdate to 2.8.2yesyesyesyesyes
dialsUpdate to 1.9.2yesyesyesyesyes
xia2Update to 0.5.542yesyesyesyesyes
aimlessUpdate to 0.7.1yesyesyesyesyes
ccp4icorrection to phaser atom search interfaceyesyesyesyesyes
imosflmcorrection to running of pointless and aimless---yesyes
ccp4i2updated xia2 interfacesyesyesyesyesyes

Update ID: 7.0.057
Date: 09.05.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
cootMinor fixesyesyesyes--
pointlessupdate to 1.11.12yesyesyesyesyes
duiworkaround for FPE issueyesyesyesyesyes
ccp4iphaser MR interface updateyesyesyesyesyes
mrbump interface updateyesyesyesyesyes
ccp4i2crank2 interface updateyesyesyesyesyes
refmac inteface updateyesyesyesyesyes
lorestr interface updateyesyesyesyesyes
prosmart inteface updateyesyesyesyesyes
mrbumpupdateyesyesyesyesyes
truncateserious issue with F/sigF (thanks Global Phasing team for fix)yesyesyesyesyes

Update ID: 7.0.058
Date: 08.06.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
ccp4i2bug fixesyesyesyesyesyes
ccp4mgfix for atom picking issueyesyesyesyesyes
dialsupdate to 1.9.3yesyesyesyesyes
aimlessBug fixesyesyesyesyesyes
ctruncateBug fixesyesyesyesyesyes
refmac5fixes for conn issue and mask issueyesyesyesyesyes
increased stacksize for EM mapsyes----
ampleupdate to 1.4.4yesyesyesyesyes
arcimboldofixes to Borges and Shredderyesyesyes--
panddasupdate to 0.2.12, runs with new cctbxyesyesyes--

Update ID: 7.0.059
Date: 03.07.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
crank2various fixes and updatesyesyesyesyesyes
ccp4iupdates to crank2 interfaceyesyesyesyesyes
cootfix for his-flip issuesyesyesyes--
phaserremoval of .git directory, FPE issuesyes----
ccp4i2fix for cache filesyesyesyesyesyes
updates to crank2 interfaceyesyesyesyesyes
enum34updated support library in pythonyesyesyesyesyes

Update ID: 7.0.060
Date: 11.07.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
molrepfix for z-score outputyesyesyesyesyes
pointlessupdate to 1.11.14yesyesyesyesyes
aimlessupdate to 0.7.2yesyesyesyesyes
fragonupdate to 0.1.1yesyesyes--
custom fragment option in CCP4i2yesyesyes--
acedrgBug fixes, corrections to LINK generation modeyesyesyesyesyes
rabdamupdate to 1.3.0yesyesyesyesyes

Update ID: 7.0.061
Date: 15.08.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
dialsupdate to 1.10.4yesyesyesyesyes
xia2update to 0.5.582yesyesyesyesyes
ccp4i2updates for updated xia2 and dialsyesyesyesyesyes
molprobityNew: molprobity from Richardson Labyesyesyesyesyes
Many thanks to Jane Richardson and Nigel Moriartyyesyesyesyesyes
lorestrUse of bundled molprobityyesyesyesyesyes

Update ID: 7.0.062
Date: 31.08.18

Component Description Mac OS 64-bitLinux 32-bitLinux 64-bitWindows 32-bitWindows 64-bit
monomersmajor overhaulyesyesyesyesyes
over 7000 new entries and 8000 updatesyesyesyesyesyes
mordaUpdate to release 0.23yesyesyes--
buccaneerNew EM reference structureyesyesyesyesyes
refmacupdate for new monomer libraryyesyesyesyesyes

Reporting bugs

All bugs should be reported to ccp4@stfc.ac.uk.