Slide 15 of 27
Note that the “Main menu” changes when we are running post-refinement; this also happens when we integrate with the GUI.
Clicking on the “Continue” button lets Mosflm proceed stepwise through the refinement. It’s worthwhile stepping slowly for the first few steps, but once you are satisfied things are proceeding well, click on the “Timeout mode” button (bottom left of the GUI) and Mosflm will stop “waiting for input”.
A pop-up window shows an ASCII representation of the average spot profile with figures for the RMS residual (which should be < half the pixel size) and the weighted residual (~1.0).
When post-refinement has finished, the “Main menu” changes back to the initial format.
If the detector parameters have not been defined prior to this stage, convergence can take several cycles.
Running the integration step via the GUI is done in a broadly similar fashiion.