The CCP4 Resources for Crystallography web page.
To submit a link to the database use this form.
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Contents:
01.Institution (back to top)
02.Software_and_Libs (back to top)
- A Software Toolkit for de Novo Ligand Design
http://chem.leeds.ac.uk/ICAMS/eccc/Paper22.html
- A database of processes running in your computer. Find out what the function of each file is in your computer.
http://www.tasklist.org
- ARP / wARP Home Page
http://www.embl-hamburg.de/ARP/
- Autostruct
http://www.autostruct.org
- Axel Brunger's Research Group and the X-PLOR Home Page
http://xplor.csb.yale.edu/
- BOBSCRIPT home page
http://biop.ox.ac.uk/bobscript/
- BeVirusFree - The Complete Anti Spam Solution: Spam Filter, Virus Protection, and Email Security.
http://www.bevirusfree.com
- Biomolecular Structure and Modelling Group at University College London
http://www.biochem.ucl.ac.uk/bsm/index.html
- CCP4 ftp area
ftp://ftp.ccp4.ac.uk/
- CCPN (NMR CCP) Home page
http://www.bio.cam.ac.uk/nmr/ccp/
- CHART Paul Emsley's wrapper for the CCP4 program suite and Shelx for MIR(AS) structure determination.
http://crick.chem.gla.ac.uk/~paule/chart/
- CINEMA Colour INteractive Editor for Multiple Alignments
http://www.biochem.ucl.ac.uk/bsm/dbbrowser/CINEMA2.02/index2.html
- Comfortable multiple sequence alignment editor for Linux, Mac, Unix and Windows integrating NT-sequence, AA-sequence and structure
http://www.charite.de/bioinf/strap/
- Computer Aided Chemistry and Biotechnology Software for Silicon Graphics
http://www.chemie.fu-berlin.de/chemistry/misc/chemsoft.html
- Crystallography Service Software Inventory
http://www.cem.msu.edu/~ward/cs_softinv.html
- DNA multiple alignment programs
http://www.csse.monash.edu.au/~lloyd/tildeStrings/index.html
- DOCK
http://www.cmpharm.ucsf.edu/kuntz/dock.html
- EDPDB - a program to manipulate and extract information from PDB files
http://omega.omrf.ouhsc.edu/zhangc/edpdb/edpdb.html
- FLEX. Flex is a simple, portable molecular graphics program
http://www.sdsc.edu/CCMS/Packages/flex.html
- HKL Research Inc., DENZO
http://www.hkl-xray.com/
- ICAMS Institute for Computer Applications in Molecular Sciences
http://www.chem.leeds.ac.uk/ICAMS/new_web/
- INO, visualizing structural biology
http://www.bioz.unibas.ch/~xray/dino/
- IUCr - International Union of Crystallography
http://www.iucr.org/
- Internet C/C++: a C/C++ compiler which compiles to a bytecode
http://www.xmission.com/~icvm/
- Interoperable Informatics Infrastructure Consortium
http://www.i3c.org
- LISA web-based database system for protein crystallography
http://labinfo.sourceforge.net/
- MAID routine for automated fitting of electron density maps
http://www.msi.umn.edu/~levitt/
- MARABOU Modify Atoms in Results to Achieve Binding Organic Units
http://chem.leeds.ac.uk/ICAMS/eccc/marabou.html
- MOLMOL
http://www.mol.biol.ethz.ch/wuthrich/software/molmol/
- Mesa 3D graphics library
http://www.mesa3d.org/
- MolScript, a program for displaying molecular 3D structures
http://www.avatar.se/molscript/
- Molecular Library
http://www.mathmol.com/
- Molecular display software
http://www.danforthcenter.org/smith/molview.htm
- Mosflm FTP area
ftp://ftp.mrc-lmb.cam.ac.uk/pub/mosflm/
- NAMD
http://www.ks.uiuc.edu/Research/namd/
- ORTEP
http://www.ornl.gov/ortep/doc/toc.html
- OWL Protein Sequence Database and Software
http://www.leeds.ac.uk/bmb/owl/owl.html
- Object-Oriented Programming in Tcl/Tk
http://www.wn.com/biz/itcl/
- PDB3D Homepage
http://www.doe-mbi.ucla.edu/Services/PDB3D/
- PX Protein eXtension to Tcl/Tk
http://www.biochem.ucl.ac.uk/~rmiller/px.html
- PyMOL a molecular graphics system
http://www.pymol.org/
- Rasmol and Chime
http://www.umass.edu/microbio/rasmol/
- Raster3D, a set of tools for generating high quality raster images of proteins
http://www.bmsc.washington.edu/raster3d/raster3d.html
- Ribosome Database Project
http://www.cme.msu.edu/RDP/html/index.html
- SMILES Daylight CIS, Inc
http://www.daylight.com/index.html
- SPROUT, a de novo Ligand Design software
http://www.chem.leeds.ac.uk/ICAMS/new_web/
- SQUID
http://www.ysbl.york.ac.uk/~oldfield/squid
- SURFNET
http://www.biochem.ucl.ac.uk/~roman/surfnet/surfnet.html
- Spatial Odyssey
http://www.odyssey.ursus.maine.edu/gisweb/
- TNT Macromolecular Refinement Package
http://www.uoxray.uoregon.edu/tnt/welcome.html
- Tcl/Tk Project At Sun Microsystems Laboratories
http://www.sunlabs.com/research/tcl/
- The BioInformatics Software Resource (BISR)
http://bioinfo.nist.gov/BISR/
- The General Atomic and Molecular Electronic Structure System (GAMESS)
http://www.msg.ameslab.gov/GAMESS/GAMESS.html
- The PDBtool A Protein Structure Browser, Query and Verification Tool
http://www.cse.ogi.edu/DISC/PDBTool/
- The WWW Virtual Library
http://www.w3.org/vl/Overview.html
- VHG - the Virtual Hyperglossary
http://www.vhg.org.uk/
- XPLOR
http://xplor.csb.yale.edu/
- Ygl
http://www.thp.uni-duisburg.de/Ygl/ReadMe.html
- daVINCI
http://www.boutell.com/lsm/lsmbyid.cgi/000190
- evolution algorithms of complexification
http://www.iephb.ru/genphen0.html
- gOpenmol
http://www.csc.fi/~laaksone/gopenmol/gopenmol.html
- Åsbo arbetskooperativ erbjuder arbetsrehabilitering för dig som av psykosociala,socialmedicinska eller andra skäl har svårt att komma in på arbetsmarknaden
http://goto.glocalnet.net/asbo
03.Teaching (back to top)
04.Links_to_Databases (back to top)
05.Bioimage_Databases (back to top)
06.Biochemstry_Databases (back to top)
07.Sequence_Databases (back to top)
08.Transmembrane_Sequence (back to top)
- BeVirusFree - The Complete Anti Spam Solution: Spam Filter, Virus Protection, and Email Security.
http://www.bevirusfree.com
- Åsbo arbetskooperativ erbjuder arbetsrehabilitering för dig som av psykosociala,socialmedicinska eller andra skäl har svårt att komma in på arbetsmarknaden
http://goto.glocalnet.net/asbo
09.Motif_Search_Alignments (back to top)
10.Predictions (back to top)
11.PDB_Search (back to top)
12.Carbohydrates (back to top)
13.DNA2Protein (back to top)
14.NMR (back to top)
15.Web_Search_tools (back to top)
16.CCP4_Favourites (back to top)
This script was last run on Fri May 25 15:10:25 BST 2012.
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There is also a list of current dead, down or VERY slow links.
There are currently 138 working links.
Alun Ashton