/* ccp4_parser_f.c: Fortran API to ccp4_parser.c Copyright (C) 2001 CCLRC, Peter Briggs This library is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License version 3, modified in accordance with the provisions of the license to address the requirements of UK law. You should have received a copy of the modified GNU Lesser General Public License along with this library. If not, copies may be downloaded from http://www.ccp4.ac.uk/ccp4license.php This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. */ /** @page cparser_f_page Fortran API to CParser * * @section cparser_f_file_list File list * * @section cparser_f_overview Overview This library consists of a set of wrappers to the CParser library giving the same API as the original parser.f */ /** @file ccp4_parser_f.c * * @brief Fortran API to ccp4_parser.c. * * @author Peter Briggs */ /* ccp4_parser_f.c Peter Briggs CCP4 August 2001 This file contains Fortran API functions which provide the following functionality originally found in the parser.f file: PARSER read and interpret data from the input stream PARSE free format read routine PARSEDL change delimiters plus internal utility functions which should not be accessed directly from an application. */ /*#define FORTRAN_CALL_DEBUG 1*/ #if defined (FORTRAN_CALL_DEBUG) # define PARSER_DEBUG(x) x #else # define PARSER_DEBUG(x) #endif /* CCP4 header file for machine dependency */ #include "ccp4_sysdep.h" /* CCP4 header file for Fortran interfaces */ #include "ccp4_fortran.h" /* C parser header file */ #include "ccp4_parser.h" #include "ccp4_general.h" /* rcsid[] = "$Id: ccp4_parser_f.c,v 1.14 2008/06/18 16:55:56 mdw Exp $" */ /*------------------------------------------------------------------*/ /* Utility functions */ /*------------------------------------------------------------------*/ /* fparse_isblank Given a string and its length, returns 1 if the only characters are whitespace or newlines, and 0 if there are other characters. */ int fparse_isblank(const char *line, const int line_len) { int i; if (line_len > 0) { for (i=0; itoken; /* Loop over all tokens */ for (i=0; intokens; i++) { PARSER_DEBUG(printf("fparse_populate_arrays: Token %d\n",i);) /* Positions for first and last characters Add one on because Fortran numbers array elements from one */ ibeg[i] = token[i].ibeg+1; iend[i] = token[i].iend+1; PARSER_DEBUG(printf("fparse_populate_arrays: ibeg = %d, iend = %d\n",ibeg[i],iend[i]);) /* Token types 0 = null field 1 = character string 2 = number */ if (!token[i].isnull) { /* Either string or number */ if (token[i].isstring) { /* String token */ PARSER_DEBUG(printf("fparse_populate_arrays: string token\n");) ityp[i] = 1; PARSER_DEBUG(printf("fparse_populate_arrays: 4-letter version is \"%s\"\n",token[i].word);) if (token[i].strlength > 4) { idec[i] = 4; } else { idec[i] = token[i].strlength; } PARSER_DEBUG(printf(" ityp = %d\n",ityp[i]);) } else if (token[i].isnumber) { /* Numerical token */ PARSER_DEBUG(printf("fparse_populate_arrays: number token\n");) ityp[i] = 2; fvalue[i] = (float) token[i].value; if (token[i].frcdigits) { /* Real number */ idec[i] = (token[i].intdigits+1)*100 + token[i].frcdigits; } else { /* Integer number */ idec[i] = token[i].intdigits; } PARSER_DEBUG(printf(" ityp = %d\n",ityp[i]);) } else { /* Unrecognised token type */ PARSER_DEBUG(printf("fparse_populate_arrays: unrecognised token type - setting to null");) ityp[i] = 0; } /* cvalue is set for both string and numerical tokens It appears that Fortran allocates a block of memory for string arrays which is basically string(1) followed by string(2) etc, and then the length string_len is the number of characters in a single element. */ iindex = i*cvalue_len; pstr = &(cvalue[iindex]); PARSER_DEBUG({ printf("fparse_populate_arrays: token string stored as \"%s\"\n",token[i].word); printf("fparse_populate_arrays: initial value of cvalue[%d] is \"%s\"\n",i,pstr); }) /* Store the value and pad if necessary */ fparse_strncpypad(pstr,token[i].word,cvalue_len); PARSER_DEBUG(printf("fparse_populate_arrays: cvalue[%d] is now \"%s\"\n",i,pstr);) } else { /* Null token */ PARSER_DEBUG(printf("fparse_populate_arrays: null field");) ityp[i] = 0; PARSER_DEBUG(printf(" ityp = %d\n",ityp[i]);) } /* All assignments complete for this token */ } return 1; } /*------------------------------------------------------------------*/ /* fparse_delimiters Set and get delimiters for use in ccp4_parse(r). This should only be called internally (from PARSDL). If called with parser set to NULL, the lists of characters in new_delimiters and new_nulldelimiters are stored. When called with a valid pointer to a parser structure, the stored lists of characters form the new delimiter sets via a call to ccp4_parse_delimiters. NB: if delimiter strings are set with a call to fparse_delimiters then they persist in memory unless a subsequent call is made with all arguments set to NULL. This represents a potential memory leak. */ int fparse_delimiters(CCP4PARSERARRAY *parser, char *new_delimiters, char *new_nulldelimiters) { int ndelim; static char *delimiters=NULL, *nulldelimiters=NULL; PARSER_DEBUG(puts("fparse_delimiters: starting");) if (!parser) { PARSER_DEBUG({ puts("fparse_delimiters: setting local lists"); if (new_delimiters) printf("fparse_delimiters: new_delimiters = \"%s\"\n",new_delimiters); if (new_nulldelimiters) printf("fparse_delimiters: new_nulldelimiters = \"%s\"\n",new_nulldelimiters); }) /* Set the local lists of delimiters depending on the input */ /* Standard delimiters */ if (!new_delimiters) { if (delimiters) free(delimiters); delimiters = NULL; } else { ndelim = strlen(new_delimiters) + 1; delimiters = (char *) realloc(delimiters,ndelim*sizeof(char)); if (delimiters) { strncpy(delimiters,new_delimiters,ndelim); PARSER_DEBUG(printf("fparse_delimiters: delimiters set to \"%s\"\n",delimiters);) } else { ccperror(4,"fparse_delimiters: couldn't reallocate delimiters"); } } /* Null delimiters */ if (!new_nulldelimiters) { if (nulldelimiters) free(nulldelimiters); nulldelimiters = NULL; } else { ndelim = strlen(new_nulldelimiters) + 1; nulldelimiters = (char *) realloc(nulldelimiters,ndelim*sizeof(char)); if (nulldelimiters) { strncpy(nulldelimiters,new_nulldelimiters,ndelim); PARSER_DEBUG(printf("fparse_delimiters: nulldelimiters set to \"%s\"\n",nulldelimiters);) } else { ccperror(4,"fparse_delimiters: couldn't reallocate null delimiters"); } } } else { /* Set the parser array so that it uses the delimiters already stored */ PARSER_DEBUG({ puts("fparse_delimiters: setting parser to use stored delimiters"); }) if (!ccp4_parse_delimiters(parser,delimiters,nulldelimiters)) ccperror(4,"fparse_delimiters: couldn't reset delimiters"); PARSER_DEBUG(printf("fparse_delimiters: now set to \"%s\" and \"%s\"\n",parser->delim, parser->nulldelim);) return 0; } return 1; } /*------------------------------------------------------------------*/ /* PARSER This function implements the Fortran equivalent of: SUBROUTINE PARSER(KEY,LINE,IBEG,IEND,ITYP,FVALUE,CVALUE,IDEC,NTOK,LEND,PRINT) which is the original CCP4 keyword parser. The function wraps the ccp4_parser routines to mimic the behaviour of the original subroutine. */ FORTRAN_SUBR(PARSER,parser, (fpstr key, fpstr line, int *ibeg, int *iend, int *ityp, float *fvalue, fpstr cvalue, int *idec, int *ntok, ftn_logical *lend, const ftn_logical *print, int key_len, int line_len, int cvalue_len), (fpstr key, fpstr line, int *ibeg, int *iend, int *ityp, float *fvalue, fpstr cvalue, int *idec, int *ntok, ftn_logical *lend, const ftn_logical *print), (fpstr key, int key_len, fpstr line, int line_len, int *ibeg, int *iend, int *ityp, float *fvalue, fpstr cvalue, int cvalue_len, int *idec, int *ntok, ftn_logical *lend, const ftn_logical *print)) { static FILE *fparse_fp = NULL; int max_line_len,lline,cprint = 0; char *cline; CCP4PARSERARRAY *parser = NULL; PARSER_DEBUG(puts("PARSER: starting");) /* On input ntok is the maximum number of fields to be parsed If ntok < 20 then set to 20 */ if (*ntok < 20) *ntok = 20; /* also reset if ntok is silly - this is a trap for uninitialised ntok */ if (*ntok > 10000) *ntok = 10000; PARSER_DEBUG({ printf("PARSER: set maximum number of tokens to %d\n",*ntok); printf("PARSER: line is initially \"%s\"\n",line); }) /* copy to C string, but also allocate enough memory for return value */ cline = (char *) ccp4_utils_malloc((FTN_LEN(line)+1)*sizeof(char)); lline = ccp4_utils_flength(FTN_STR(line),FTN_LEN(line)); strncpy(cline,FTN_STR(line),lline); cline[lline] = '\0'; /* Get the maximum line length Use the FTN_LEN macro for this since we can't rely on getting the line_len argument on all systems */ max_line_len = FTN_LEN(line); PARSER_DEBUG(printf("PARSER: line length is %d\n",max_line_len);) /* Set up a parser array to handle ntok tokens */ parser = (CCP4PARSERARRAY *) ccp4_parse_start(*ntok); if (!parser) { PARSER_DEBUG(printf("PARSER: failed to allocate memory");) *lend = FORTRAN_LOGICAL_TRUE; return; } PARSER_DEBUG(puts("PARSER: parser array initialised");) /* Set up the delimiters */ PARSER_DEBUG(puts("PARSER: fetching delimiters");) fparse_delimiters(parser,NULL,NULL); PARSER_DEBUG(puts("PARSER: delimiters set");) /* Set up the maximum and minimum exponents used to avoid under/overflow Since Fortran REALs are equivalent to C floats, make sure these limits are appropriate for floats */ ccp4_parse_maxmin(parser,FLT_MAX_10_EXP,FLT_MIN_10_EXP); /* Silent or verbose output? */ PARSER_DEBUG(printf("PARSER: print set to %d\n",*print);) if (*print != FORTRAN_LOGICAL_FALSE) cprint = 1; PARSER_DEBUG({ if (cprint) { puts("PARSER: verbose output ON"); } else { puts("PARSER: verbose output OFF"); } }) /* Was ccp4_parser reading from an external file last time? */ if (fparse_fp) { PARSER_DEBUG(printf("PARSER: we were reading from an external file\n");) parser->fp = fparse_fp; } /* Call ccp4_parser to do the work */ PARSER_DEBUG({ printf("PARSER: line sent as \"%s\"\n",cline); }) *ntok = ccp4_parser(cline,max_line_len,parser,cprint); PARSER_DEBUG({ printf("PARSER: returned %d tokens from ccp4_parser\n",*ntok); printf("PARSER: line returned as \"%s\"\n",cline); }) /* Check for end-of-file */ if (!*ntok) { PARSER_DEBUG(puts("PARSER: reached end of file");) *lend = FORTRAN_LOGICAL_TRUE; } else { PARSER_DEBUG(puts("PARSER: end of file not reached yet");) *lend = FORTRAN_LOGICAL_FALSE; /* Keyword NB You need to pad the string with spaces before sending back to Fortran */ PARSER_DEBUG(printf("PARSER: ccp4_parser keyword is \"%s\"\n",parser->keyword);) ccp4_CtoFString(FTN_STR(key),FTN_LEN(key),parser->keyword); PARSER_DEBUG(printf("PARSER: PARSER keyword is \"%s\"\n",key);) PARSER_DEBUG(printf("PARSER: ccp4_parser line is \"%s\"\n",cline);) ccp4_CtoFString(FTN_STR(line),FTN_LEN(line),cline); PARSER_DEBUG(printf("PARSER: PARSER line is \"%s\"\n",line);) /* Populate the Fortranic arrays */ PARSER_DEBUG(printf("PARSER: about to populate the arrays\n");) fparse_populate_arrays(parser,ibeg,iend,ityp,fvalue,cvalue,FTN_LEN(cvalue),idec); PARSER_DEBUG(printf("PARSER: arrays populated\n");) } PARSER_DEBUG(puts("PARSER: finished assignments");) /* Check if ccp4_parser was reading from an external file which is still open */ if (parser->fp) { PARSER_DEBUG(printf("PARSER: reading from external file\n");) fparse_fp = parser->fp; } else { fparse_fp = NULL; } /* Free the parser array */ ccp4_parse_end(parser); PARSER_DEBUG(puts("PARSER: freed the memory, returning");) free(cline); return; } /*------------------------------------------------------------------*/ /* PARSE This function implements the Fortran equivalent of: SUBROUTINE PARSE(LINE,IBEG,IEND,ITYP,FVALUE,CVALUE,IDEC,N) */ FORTRAN_SUBR(PARSE,parse, (fpstr line, int *ibeg, int *iend, int *ityp, float *fvalue, fpstr cvalue, int *idec, int *n, int line_len, int cvalue_len), (fpstr line, int *ibeg, int *iend, int *ityp, float *fvalue, fpstr cvalue, int *idec, int *n), (fpstr line, int line_len, int *ibeg, int *iend, int *ityp, float *fvalue, fpstr cvalue, int cvalue_len, int *idec, int *n)) { char *temp_line; static int maxtok = 0; CCP4PARSERARRAY *parser = NULL; temp_line = ccp4_FtoCString(FTN_STR(line), FTN_LEN(line)); PARSER_DEBUG({ puts("PARSE: starting"); printf("PARSE: line is initially \"%s\"\n",temp_line); }) /* Set a value for the maximum number of tokens When called for the first time n should be less than zero, and ABS(n) is the maximum number of tokens. When called subsequently, if n > 0 then this is the number of tokens already read in. To handle this, set maxtok only when a -ve value of n is input. */ if (*n < 0) { maxtok = -1*(*n); } /* If ntok is still zero then this is probably an error so return without any action */ if (maxtok == 0) { printf("PARSE: zero number of tokens specified - aborting\n"); return; } /* Set up a parser array to handle maxtok tokens */ parser = (CCP4PARSERARRAY *) ccp4_parse_start(maxtok); if (!parser) { PARSER_DEBUG(printf("PARSE: failed to allocate memory");) return; } PARSER_DEBUG(puts("PARSE: parser array initialised");) /* Set up the delimiters */ PARSER_DEBUG(puts("PARSER: fetching delimiters");) fparse_delimiters(parser,NULL,NULL); PARSER_DEBUG(puts("PARSER: delimiters set");) /* Call ccp4_parse to do the work */ *n = ccp4_parse(temp_line,parser); PARSER_DEBUG(printf("PARSE: returned %d tokens from ccp4_parse\n",*n);) /* Populate the Fortranic arrays */ PARSER_DEBUG(printf("PARSE: about to populate the arrays\n");) fparse_populate_arrays(parser,ibeg,iend,ityp,fvalue,cvalue,FTN_LEN(cvalue),idec); PARSER_DEBUG(printf("PARSE: arrays populated\n");) /* Free the parser array */ ccp4_parse_end(parser); PARSER_DEBUG(puts("PARSE: freed the memory, returning");) free(temp_line); return; } /*------------------------------------------------------------------*/ /* PARSDL Set delimiters for PARSE, PARSER SUBROUTINE PARSDL(NEWDLM,NNEWDL,NSPECD) */ FORTRAN_SUBR(PARSDL,parsdl, (fpstr newdlm, int *nnewdl, int *nspecd, int newdlm_len), (fpstr newdlm, int *nnewdl, int *nspecd), (fpstr newdlm, int newdlm_len, int *nnewdl, int *nspecd)) { int nnulldl; char *delim=NULL, *nulldelim=NULL; PARSER_DEBUG(puts("PARSDL: starting");) if (*nnewdl <= 0) { /* Reset the delimiters to the defaults */ PARSER_DEBUG(puts("PARSDL: resetting to default delimiters");) fparse_delimiters(NULL,NULL,NULL); } else { /* Check the number of new delimiters is no more than the number of characters actually supplied */ if (FTN_LEN(newdlm) < *nnewdl) { ccperror(4,"PARSDL: too few delimiter characters supplied"); return; } /* Extract the list of delimiter characters */ delim = (char *) malloc((*nnewdl+1)*sizeof(char)); if (delim) { strncpy(delim,newdlm,*nnewdl); delim[*nnewdl] = '\0'; } PARSER_DEBUG(printf("PARSDL: delimiters are \"%s\"\n",delim);) /* Extract the list of null delimiter characters (if any) */ nnulldl = *nnewdl - *nspecd; if (nnulldl > 0) { nulldelim = (char *) malloc((nnulldl+1)*sizeof(char)); if (nulldelim) { strncpy(nulldelim,&(newdlm[*nspecd]),nnulldl); nulldelim[nnulldl] = '\0'; } PARSER_DEBUG(printf("PARSDL: null delimiters are \"%s\"\n",nulldelim);) } else { nulldelim = (char *) malloc(sizeof(char)); if (nulldelim) { nulldelim[0] = '\0'; } } /* Store the delimiters for later reference */ fparse_delimiters(NULL,delim,nulldelim); } /* Free locally allocated memory */ if (delim) free(delim); if (nulldelim) free(nulldelim); PARSER_DEBUG(puts("PARSDL: finished");) return; }