| File |
Rev. |
Age |
Author |
Last log entry |
Attic/
[show contents]
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python/
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3Dgeom.cpp
|
|
1.2
|
3 years |
nds65 |
changes for Windows
|
3Dgeom.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
3Dgrid.cpp
|
|
1.2
|
4 years |
ccb |
bug 2526, include HAVE_BSTRING_H for irix
|
3Dgrid.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
FlankPPSource.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
FlankPPSource.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
LastKphipsiSource.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
LastKphipsiSource.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
Makefile.am
|
|
1.3
|
4 years |
ccb |
bug 2587, update to use gc7.0
|
Makefile.in
|
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1.4
|
3 years |
ccb |
bug 3068, update for rapper_LDFLAGS
|
PhipsiSource.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
TrimerSource.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
TrimerSource.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
WeightedDistribMean.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
WeightedDistribMean.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
aaconv.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
aaconv.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
abinitio.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
abinitio.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
align.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
align.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
analyze.cpp
|
|
1.3
|
3 years |
nds65 |
fix typo
|
analyze.h
|
|
1.2
|
4 years |
ccb |
bug 2528, 32-bit ints with 64-bit pointers equals problems
|
array.cpp
|
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1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
array.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
atom.cpp
|
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1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
atom.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
atomconv.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
atomconv.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
band.cpp
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1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
band.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
band_backup.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
bitfield.cpp
|
|
1.2
|
4 years |
ccb |
bug 2526, include HAVE_BSTRING_H for irix
|
bitfield.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
build_residue.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
build_residue.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
build_side_chain.cpp
|
|
1.2
|
4 years |
ccb |
bug 2526, include HAVE_BSTRING_H for irix
|
build_side_chain.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
ca_trace.cpp
|
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1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
ca_trace.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
cluster.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
cluster.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
cluster_side_chain.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
cluster_side_chain.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
comparative.cpp
|
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1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
comparative.h
|
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1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
contactmap.cpp
|
|
1.2
|
4 years |
ccb |
bug 2526, include HAVE_BSTRING_H for irix
|
contactmap.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
contree.cpp
|
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1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
contree.h
|
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1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
cores.cpp
|
|
1.2
|
4 years |
ccb |
bug 2527, similar to bug 2313
|
cores.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
ctdata.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
dict.cpp
|
|
1.2
|
4 years |
ccb |
bug 2525, replace int by long for operation on 64-bit machines - may need to wat... |
dict.h
|
|
1.2
|
4 years |
ccb |
bug 2525, replace int by long for operation on 64-bit machines - may need to wat... |
edensity.cpp
|
|
1.2
|
3 years |
nds65 |
Get scattering using get_element instead of get_element_unk (Bug 3461).
|
edensity.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
edm_sidechains.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
edm_sidechains.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
ellipsoids.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
ellipsoids.h
|
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1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
energy.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
energy.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
exhaustive.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
exhaustive.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
fminimize.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
fminimize.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
fread.cpp
|
|
1.2
|
4 years |
ccb |
bug 2528, require values entered into list() to be same length as (void *)
|
fread.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
hash_table.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
hash_table.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
hbonds.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
hbonds.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
heap.cpp
|
|
1.2
|
4 years |
ccb |
bug 2525, replace int by long for operation on 64-bit machines - may need to wat... |
heap.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
iterator.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
iterator.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
jacobi.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
jacobi.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
kip.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
kip_pdb.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
kip_pdb.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
kip_snake.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
kip_snake.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
lib_choral.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
lib_choral.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
lib_cluster.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
lib_frags.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
lib_frags.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
lib_pir.cpp
|
|
1.2
|
4 years |
ccb |
bug 2313, reimplement rampage fix for none fixed length array
|
lib_pir.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
list.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
list.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
localMove.cpp
|
|
1.2
|
3 years |
nds65 |
changes for Windows
|
localMove.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
loop.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
loop.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
map.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
map.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
measure.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
measure.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
misc.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
misc.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
nmr.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
params.cpp
|
|
1.2
|
4 years |
ccb |
bug 2535, storing argv as is is dangerous
|
params.h
|
|
1.4
|
3 years |
rmk65 |
direct.h only included if we are on Windows
|
params.xml
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
parse.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
parse.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
pdf.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
pdf.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
phipsi.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
phipsi.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
pop_search.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
pop_search.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
pop_search_frags.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
profile.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
profile.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
psa.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
psa.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
queue.cpp
|
|
1.2
|
4 years |
ccb |
bug 2525, replace int by long for operation on 64-bit machines - may need to wat... |
queue.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
rampage.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
rampage.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
ran2.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
ran2.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
rapdf.cpp
|
|
1.2
|
3 years |
rmk65 |
typo fix for string.h inclusion
|
rapdf.h
|
|
1.2
|
3 years |
rmk65 |
rpadf_enabled should be bool not int
|
rapper.cpp
|
|
1.2
|
4 years |
ccb |
bug 2523, require to initialise Boehm GC
|
read_map.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
read_map.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
read_restraint.cpp
|
|
1.2
|
4 years |
ccb |
bug 2526, include HAVE_BSTRING_H for irix
|
read_restraint.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
residue.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
residue.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
residue_range.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
residue_range.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
restraints.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
restraints.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
rotamers.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
rotamers.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
saxs.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
saxs.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
search_residue.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
search_residue.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
setup.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
setup.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
side_chains.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
side_chains.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
space_grid.cpp
|
|
1.2
|
4 years |
ccb |
bug 2526, include HAVE_BSTRING_H for irix
|
space_grid.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
surface.cpp
|
|
1.3
|
4 years |
ccb |
bug 2528, require values entered into list() to be same length as (void *)
|
surface.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
target.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
target.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
typed_value.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
typed_value.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
utils.cpp
|
|
1.2
|
4 years |
ccb |
bug 2526, include HAVE_BSTRING_H for irix
|
utils.h
|
|
1.2
|
3 years |
nds65 |
changes for Windows
|
visualize.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
visualize.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
xmlmsg.cpp
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|
xmlmsg.h
|
|
1.1.1.1
|
4 years |
ccb |
rapper code from Nick Furnham
|